Discover, Analyze, and Integrate NIH Common Fund Data

The NIH Common Fund programs generate diverse datasets from a variety of projects ranging from genomics to phenotypes. The Common Fund Data Ecosystem (CFDE) aims to facilitate improved discovery, reuse, integration, and analyses of these datasets to form novel hypothesis for accelerating discoveries in biomedical research.

The Common Fund Data Ecosystem (CFDE) aims to enable broad use of data generated by Common Fund Programs to accelerate hypothesis generation and discovery.

TRAINING & OUTREACH
CFDE Webinar Series

The virtual CFDE workshop 'A Human Geneticists' Guide to the Common Fund Data Ecosystem' will feature the NIH perspective of the CFDE, gene set to human traits scientific presentation, introduction to CFDE centers, and NIH funding opportunities.

Starts: January 31, 2025

Common Fund programs partnered with the CFDE

The NIH Common Fund is a funding entity within the NIH that supports bold scientific programs that catalyze discovery across all biomedical and behavioral research.

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Documentation

Learn more about the standards and protocols for accessing and submitting data to the portal

Documentation

Learn more about the standards and protocols for accessing and submitting data to the portal
fair

Making data more FAIR

The Data Resource and Knowledge Centers are dedicated to enhancing the accessibility and utility of Common Fund-generated data and resources, striving to uphold the FAIR principles. This commitment serves as a catalyst for groundbreaking biomedical discoveries, fostering synergies across the diverse datasets within the Common Fund ecosystem, thereby unlocking novel avenues of research and innovation.
  • Findable
  • Accessible
  • Interoperable
  • Reusable

Social Media

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.

This recent New York Times article sheds light on the widespread impact of chronic pain, affecting millions worldwide. The HEAL Initiative, a SPARC consortia partner, is advancing our understanding of pain. Read here: tab.so/4f8fd126 #NIH_SPARC #ChronicPain #OpenScience
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Interested in applying to the #ComplementARIE #NewApproachMethodologies Data Hub and Coordinating Center #FundingOpp? Join the #InformationalWebinar on 2/13/25 at 11am ET! bit.ly/NDHCC_Webinar
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A collaboration between researchers funded by the #NIHCommonFund #NIHHighRisk Program has uncovered genetic pathways that can protect #brain function and potentially inform new #Alzheimers therapies. go.nih.gov/rsizRAM
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📺 This final clip from WCVB-Boston features an 11-year-old boy, Harry, who has experienced progressive loss of mobility without a known cause. There is an ongoing effort at the UDN Harvard site to diagnose Harry's decline. bit.ly/3PUdQ6F @UDNForg
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Don't forget to tune in Tues. (1/21) at 3PM ET for this #NIHCommonFund #Bridge2AI discussion with Dr. Hernandez-Boussard (@StanfordMed). Learn more about how to improve #HealthEquity and patient outcomes through #ethicalAI (#AI/#ML). bit.ly/40ncneT
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🚨 Join us for the first GlyGen Webinar of 2025! 🗓 Jan 28, 2025 | 🕒 10 AM EST 🎙 Dr. Zhiyong Lu, NIH 💡 Biomedical Text Mining for Literature Retrieval & Curation 🔗 gwu-edu.zoom.us/j/91498498310 Missed previous webinars? Check our YouTube: @glygenmyglygen4223 #glycotime
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The Mutations in Time and Space conference will be held at the Broad Institute in Cambridge, MA, April 23-25, 2025. Registration is now live and abstract submissions are open until January 17th, 2025. broadinstitute.swoogo.com/mits2025/59707…
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The 6th Bioelectronic Medicine Summit is an exciting upcoming event. The deadline to submit a poster has been extended to January 31, 2025, at 11:59 pm EST Learn more on the SPARC Portal: tab.so/ae13fa7a #OpenScience #NIH_SPARC @NorthwellHealth
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Join us on Thursday, January 23 at 2:00 PM ET for a virtual seminar featuring GeneSetCart, a web application for multi-omics AI-driven gene set analysis. Please register in advance for this virtual seminar: maayanlab.cloud/turl/6660bf4c
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#NIHCommonFund #NIH_SPARC researchers recorded nerve activity in patients with implanted #VagusNerveStimulation devices to treat #epilepsy. Learn more about how their results can help make stimulation therapies more accurate and effective: go.nih.gov/KffyY0f #VNS
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Our new perspective article describing the human and non-human primate developmental GTEx projects is now out in @Nature! We outline the scope, vision, opportunities and challenges of these projects here: nature.com/articles/s4158…
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📺 In this second clip from WCVB-Boston, a father and son's search for a diagnosis is shared. The family finally received answers through the UDN Harvard Team: ROSAH syndrome—a condition so rare that fewer than 100 cases exist worldwide. bit.ly/3PzYgwQ @UDNForg
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20 days till the 15th African Society of Human Genetics and the 1st Ugandan Society of Human Genetics and Bioinformatics Conference to take place in Entebbe, Uganda 🇺🇬 📎Theme: Harnessing Data Science and Artificial Intelligence for African Genomics Meet our keynote speakers!
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Do you want to explore the #chromatin of an organism? Join our expert instructors at #LowInput25, and learn how to use low input techniques to support your research at the gene and genome-wide level. ⏰ Application deadline: 11 February 2025 More info ➡️bit.ly/4g5vsHR
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There is still time to RSVP for the annual UCT Bongani Mayosi Memorial Lecture on Friday, 31 January 2025, at 18:00 SAST. The lecture will be presented by Professor Pumla Gobodo-Madikizela, titled "Ukuba Ngumntu: Love, Compassion, Solidarity." RSVP here: bit.ly/RSVP-BM-Lectur…
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The SPARC repository was developed to curate and publish high-quality datasets related to the autonomic nervous system. Now, all peripheral nervous system data can be hosted. Learn more and contribute your data on the SPARC Portal. sparc.science #NIH_SPARC #openscience
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Two months left to submit your #ComplementARIE #FundingOpportunity applications! Check out the #FundingOpp to see how you can be at the center of #NAMs research: go.nih.gov/3MBEmGy
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New findings from the #NIHCommonFund's #NIHHighRisk Program have found a genetic checkpoint in brain cells that could help stop the progression of #AlzheimersDisease. Learn more: go.nih.gov/rsizRAM
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📺 This clip from WCVB-Boston features researchers at Mass General Hospital, one of the clinical sites for the UDN Harvard team, who found the answer for a 19-year-old Rithvik: a vascular disease with genetic change in the non-coding region. bit.ly/4h8MwNk @UDNForg
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The #NIHCommonFund’s Venture Program Advancing Non-Invasive #OpticalImaging Approaches for Biological Systems (#VentureNIOI) initiative is underway! Learn more about this exciting opportunity: commonfund.nih.gov/venture/NIOI
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Did you know #measles is one of the most contagious diseases? If one person is infected with measles, nearly everyone around them who isn’t vaccinated will get infected. Measles spreads easily when a person who’s infected breathes, coughs or sneezes. It can affect anyone, but
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💡 This month's NHGRI Genomics Landscape edition featured researchers in the Undiagnosed Diseases Program. They discovered a new genetic condition: Morimoto-Ryu-Malicdan Neuromuscular Syndrome (MRMNS). 🔗 NHGRI Genomics Landscape- January 2025 Edition: bit.ly/4ahdd0a
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GlyGen.org release v2.7 is live! 🎉 New features: • New organism: Bovine • Full-screen detail tables • Dynamic list page columns • Enhanced download options Release notes: wiki.glygen.org #glycotime #bioinformatics
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Only 1 day left to register for the #ComplementARIE #FundingOpportunity informational webinar for #TechDev centers! Register now to hear from #NIH staff and ask questions: bit.ly/TechDevWebinar
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A traumatic event is a shocking, scary, or dangerous experience that can affect someone emotionally and physically. Learn what you can do to cope after a traumatic event and how to find help: go.nih.gov/wegYCgN
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📢Save the date! 3 weeks until the 15th @AfSHG_Genetics & the 1st Ugandan Society of Human Genetics and Bioinformatics Conference 📍Entebbe, Uganda🇺🇬 🗓️ 3-7 Feb 2025 📌 Harnessing Data Science and AI for African Genomics 🧬 afshg2025.org #AfSHG #Genetics #Africa
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One month left to submit your Letters of Intent to apply to the #ComplementARIE Data Hub and Coordinating Center #FundingOpportunity! Explore the announcement and submit your optional LOI before Feb 10 go.nih.gov/3MBEmGy
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New research from the #NIHCommonFund's #NIHHighRisk program is tracking #GutMicrobiome changes across stages of #ChronicFatigueSyndrome, potentially aiding clinicians in more accurate diagnoses. Learn more: go.nih.gov/xjlCyR8 #MEcfs #ChronicFatigue
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🎧 Tune In, another podcast is up! Christine McGarvey teamed up with the Living Well Pod! 💡✨ 🔗 Listen now on (bit.ly/3BZvK4v): Apple Podcasts | Spotify | Amazon Music | Overcast | iHeartRadio | Castro | Castbox | Goodpods
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📅⏰ Time is running out! AI-READI is looking for #research interns in allied health for the Aug 2025 academic year! Interns will advance the field of #AI (#ML) and generate #data for the larger #Bridge2AI program. Apply by 1/17 for this #Internship Opp. bit.ly/3UvuGeK
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Kickstart your New Year’s fitness goals with insights from Dr. Euan Ashley, of the #MoTrPAC Bioinformatics Center Team. He discusses how exercise transforms tissue at a molecular level, offering clues on how it reverses disease effects across the body: bit.ly/4h4EbdF
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Only one more week to register for the #NIHCommonFund’s Advancing Non-Invasive #OpticalImaging Approaches for Biological Systems #FundingOpportunity informational #webinar! Register now to get all the information needed to help you apply: bit.ly/NIOIWebinar
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Interested in responsible #AI for #healthcare? Tune in 1/21 at 3PM ET for this #NIHCommonFund #Bridge2AI discussion with staff from @StanfordMed about addressing #bias for #ethicalAI to improve #HealthEquity & patient outcomes. Learn more: bit.ly/40ncneT
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Check out the most recent UDN publication! ⭐️Key takeaway: FSASD is caused by #SLC17A5 variants, with this case revealing tissue-specific mosaicism for an intragenic deletion, explaining an atypical presentation. pubmed.ncbi.nlm.nih.gov/39742826/ @UDNForg
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The #NIHCommonFund #ComplementARIE program released a new #FundingOpportunity for a Coordinating Center and Data Hub! Learn how you can contribute to accelerating development of #NewApproachMethodologies today! go.nih.gov/3MBEmGy
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For undergraduates interested in cutting-edge senescence and aging research, this is a wonderful internship opportunity! Applications are due January 25th at link below. @sennetresearch
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Did you miss the abstract deadline? Late-breaking abstract submission for #APS2025 is now open! See SPARC at booth #1414. #NIH_SPARC #OpenScience @APSPhysiology bit.ly/4gZAYwM
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Check out the most recent UDN publication! ⭐️Key takeaway: #HADHB variants cause trifunctional protein deficiency with rare complications, including FSGS and bone marrow failure. pubmed.ncbi.nlm.nih.gov/39723123/ @UDNForg
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📢Reminder to apply for the GlyGen-CFDE Summer '25 @GWU - tinyurl.com/38b9xphz. 4 paid internship positions in DC - work with cutting-edge biodata tools & gain real research experience! Check the flyer below & apply by Jan 20 🧬 #Bioinformatics #STEM #glycotime
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Check out the most recent UDN publication! ⭐️Key takeaway: Rare damaging variants in #DDX53 are linked to autism, highlighting its role in genetic testing and challenges for murine ASD models. pubmed.ncbi.nlm.nih.gov/39706195/ @UDNForg
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Only 2 more weeks to register for the #NIHCommonFund’s Advancing Non-Invasive #OpticalImaging Approaches for Biological Systems #FundingOpportunity informational #webinar! Register now to learn more and participate in the Q&A session: bit.ly/NIOIWebinar
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Looking for a new resource to kickstart your 2025 research? Start with the Kids First Data Resource Portal! Build virtual cohorts from 188K+ pediatric samples, including whole genome sequencing & RNA-Sequencing data: rebrand.ly/mdfczmq #DataDriven #KidsFirstPortal
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Happy holidays from the GlyGen team! 🍡 May the last days of this year be filled with great joy and may the new year bring many opportunities for us to advance glycobiology together! #GlyGen #Glycoscience #glycotime
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Researchers! Discover new funding opportunities for #OpenScience & #OpenData projects on the SPARC Portal! The funding page is constantly updated with the latest announcements, so you don't miss out. Check it out here: bit.ly/SPARCfunding #NIH_SPARC #OpenData #OpenScience
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Check out the most recent UDN publication! ⭐️Key takeaway: A novel #KIF21A variant (p.Leu664Pro) disrupts #TUBB3 binding, causing neuropathy, brain anomalies, developmental delay, and strabismus without #CFEOM. @UDNForg pubmed.ncbi.nlm.nih.gov/39643435/
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RefMet molecule page layout now contains sections covering nomenclature, molecular descriptors,chemical/biochemical classification, distribution info for NMDR studies (including species and tissue plots), external identifiers to other databases and MS/NMR spectra of standards.
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Want to learn more about the #NIHCommonFund’s Advancing Non-Invasive #Optical #Imaging Approaches for Biological Systems #FundingOpportunity? Join the informational #webinar January 16th at 1 PM ET. Register: bit.ly/NIOIWebinar
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📅 Save the date for the #NIH_CFDE program's virtual workshop 1/31 from 10AM to 2PM ET! Discover how the #NIHCommonFund's #DataEcosystem empowers discovery through open access #data & resources for the #biomedical #research community. Register: bit.ly/3vX6iJK
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Are you interested in using #genomic and #phenotypic data for #pediatric research? A #FundingOpportunity from the #NIHCommonFund's Gabriella Miller #KidsFirst program co-led by @theNCI & @NICHD_NIH opens Jan 16th, 2025: go.nih.gov/oDE9bWv #BirthDefects #ChildhoodCancers
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Human tumor atlases and related data, including sequencing, imaging, and clinical information, are available to the community in the #HTAN Data Portal. data.humantumoratlas.org/explore
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The #NIH_CFDE is is making #NIHCommonFund data sets more findable, accessible, interoperable, and reusable (#FAIR)! Learn how @orau will support the #DataEcosystem through a #training center to help users work with the #data: bit.ly/4gj771t
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Are you a #biomedical researcher studying #NewApproachMethodologies? The NIH #ComplementARIE program wants to hear from you! Explore the new #FundingOpportunity to help build #TechnologyDevelopment centers for #NAMs go.nih.gov/gz5JDK6
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We’re thrilled to announce the launch of our new Blue Sky page! If you already have an account, follow us and share with your networks! Let's build and grow our community together. Stay connected for updates, collaborations, and more. 📌 Follow us at bsky.app/profile/dsi-af… 📌
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Check out the most recent UDN publication! ⭐️Key takeaway: Telehealth exams in the UDN showed strong consistency with in-person evaluations, minimal diagnostic misses, and high patient satisfaction. pubmed.ncbi.nlm.nih.gov/39629753/ @UDNForg
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Discover how mass spectrometry is revolutionizing vaccine development and infectious disease research! Watch Dr. John Cipollo's insightful GlyGen Webinar now: youtu.be/-5e8MaD8yKI Don't forget to follow and subscribe for more cutting-edge science content! 🔔 #FDA #glycotime
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#NIH_SPARC community members map pain-sensing nerves in rat hearts for the first time! This breakthrough paves the way for future research on heart disease. Learn more: tab.so/264edc30 #OpenScience
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🔬🧠 Oh synapse! Using #CryoET resources supported by #NIHCommonFund, researchers reveal how synapse shape drives #neuron communication at the molecular level. These findings could shed light on #brain disorders like #Alzheimers and #Parkinsons disease: go.nih.gov/RHERowD
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Did you miss the #KidsFirst New Research Gold Rush at #ASHG2024? Now you can feel like you're there. Watch the video NIH Research Gold Rush Poster Session & Networking Reception at ASHG 2024 rebrand.ly/kyrjxp3 @NIH_CommonFund
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📢 Did you forget to submit your #AI (#ArtificialIntelligence) abstracts for the upcoming @Bridge2aiVoice Symposium? You're in luck, the deadline has been extended to 12/23! Don't miss your chance to submit to this #NIHCommonFund #Bridge2AI event.
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Interested in applying to the #ComplementARIE #NewApproachMethodologies Technology Development Centers #FundingOpp? Join the informational #webinar on 1/14/25 at 11am ET! bit.ly/TechDevWebinar
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Researchers from #NIH_SPARC created the first maps of #pain-sensing neurons in the #heart, laying the foundation to understand how these nerves change in #HeartDisease. SPARC is supported by the #NIHCommonFund. Learn more on the @sparc_science website: sparc.science/news-and-event…
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We’re grateful for our amazing research community and the partners who drive pediatric research forward every day. Thank you for joining us on this mission to improve the lives of children worldwide. Here’s to even more discoveries in the New Year! #Community #KidsFirstDRC
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Exciting News!!! 🎉The 8th Release of the Human Reference Atlas (v2.2) is now available! See what's new in HRA v2.2 in 8th Release Notes📷Visit: humanatlas.io for the new and updated data!! @NIH @_hubmap @AndreasBueckle @katycns @_bh2
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The #NIHCommonFund’s #NIH_SPARC program is advancing #OpenScience to catalyze new #neuromodulation discoveries. Learn how the SPARC Portal provides cutting-edge information & tools for advancing bioelectronic medicine in a recent webinar featuring a @sparc_science researcher!
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Participant 229: female, age 4, with low muscle tone, motor delays, speech and language delays, and autism and a variant in RNU4-2 gene. Reach out if you know of others with similar symptoms and variant! undiagnosed.hms.harvard.edu/participants/p…
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Exciting News! The deadline for the Call for Science for the 2025 Voice AI Symposium has been extended to December 23, 2024! (eventsquid.com/event/26217) Bridge2AI-Voice is part of the @Bridge2AI program funded by the NIH Common Fund.
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The #NIHCommonFund #ComplementARIE program released a new #FundingOpportunity! Explore the announcement and begin preparing your applications now: go.nih.gov/gz5JDK6
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Cell atlasing got the weight of the world on your shoulders? Explore the Atlases Galore & Method of the Year 2024: #SpatialProteomics @naturemethods articles out this week if you need a roadmap to success! Like their namesake, these atlases will hold up well! #CellMapCrew #HuBMAP
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The #NIHCommonFund is hosting a workshop to discuss enabling #PrecisionMedicine with #AI through the integration of #MedicalImaging with other #Data types! Join the virtual interactive discussion 3/11-3/12: go.nih.gov/awiS2id
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📢 Time is running out! Submit your #AI (#ArtificialIntelligence) abstracts for the upcoming @Bridge2aiVoice Symposium. #Bridge2AI #NIHCommonFund
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8 billion. It's just a number. Today, our 3D tranche browser shows 8 billion* purchasable molecules in biologically relevant, docking-ready 3D formats. cartblanche22.docking.org/tranches/3d * Yes, yes, a wee bit of double counting. But, 8 billion!
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Older adults face growing housing instability, with 168,000 over 65 evicted yearly. A new study by the #NIHCommonFund’s #NIHFIRST program shows that home foreclosures may speed #MemoryDecline. Learn how #HousingInstability impacts health & cognition: go.nih.gov/9fiR3D9
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Are you a #biomedical #researcher interested in human voice #data paired with other clinical information? Learn about this data set from the #NIHCommonFund #Bridge2AI's Voice #AI (@Bridge2aiVoice) project that aims to develop #biomarkers for disease using the human voice data
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Ready to register for #APS2025? Don't forget to stop by the SPARC booth (#1414) in April. We'll be there to answer your questions and share the latest in open science. #NIH_SPARC #OpenScience @APSPhysiology bit.ly/4gZAYwM
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Tune in tomorrow (12/10) at 3 PM ET for the #NIHCommonFund's #Bridge2AI program discussion w/ Dr. Michelle Mello (@StanfordLaw & @StanfordMed) to hear about emerging legal trends in using #AI in #PatientCare. Learn more: bit.ly/3Vh1Y1F
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Today the week long @eLwazi_ODSP /@DSI_Africa Train-the-Trainer workshop commences! Workshop will cover using the eLwazi training workflow, developing competency-based curricula and managing computational training environments Looking forward to the impactful week!
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SPARC Community member Dr. Robert Gereau co-led a project that developed a promising implantable device for reversing opioid overdoses. This is a significant advancement in the effort to combat opioid misuse disorder. #NIH_SPARC #opioidcrisis #OpenScience science.org/doi/10.1126/sc…
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Replying to @naturemethods
This month’s Technology Feature by Vivien Marx @metricausa highlights diverse international atlas projects, where they are now, and where they may be going in the future. nature.com/articles/s4159…
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The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳 For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread. nature.com/articles/s4159…
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Just a few days left to register for the #NuclearArchitecture Meeting hosted by #4DNucleome! Join us in San Diego, CA on December 11-13, 2024. The deadline to register is Monday, December 2nd. Register today! bit.ly/3X9gha0
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#NutritionforPrecisionHealth is advancing precision #nutrition and was featured on @CBSSunday! The study is led by a coalition of NIH partners, including #NIHCommonFund, the Office of Nutrition Research, and @AllofUsResearch. Enrollment is open! Watch here allof-us.org/3UY1zkm
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Do you develop and market scientific tools? Join us tomorrow, November 22nd from 1-2 PM ET to learn various strategies from #COMPA and @MetaCell during our #CFDEPublicWebinarSeries. Register here: broadinstitute.zoom.us/webinar/regist… @CfdeWorkbench @NIH_CommonFund
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The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC https://t.co/tgdMOPiAb6
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It's almost time for #ASHG2024! Reminder, we have limited availability for exclusive 1:1 sessions at the #CFDE booth, grab yours before it's too late here: forms.gle/ioovRvfx3NA7SG…. Save travels and see you at Booth 571! @CfdeWorkbench @NIH_CommonFund
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Mark your calendars because we are ONE WEEK away from our #ASHG2024 Ancillary Session on the #CFDE! We look forward to seeing you all in Denver! @CfdeWorkbench @NIH_CommonFund @motrpac
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We are representing the Common Fund Data Ecosystem & debuting our #KnowledgeCenter Resource a #ASHG2024. Come by whenever (sign up below) to learn about how these 14 DCCs & 5 centers within the CFDE can be useful to you as a human geneticist @NIH_CommonFund @CfdeWorkbench
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Join us in two weeks ✌️ at our #ASHG2024 ancillary session: A Human Geneticists' Guide to the Common Fund Data Ecosystem! Hear perspectives by the @NIH_CommonFund, us at the KC, @CfdeWorkbench, @motrpac and @GTExPortal. Hope to see you there!
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Join us this Friday for the #CFDEPublicWebinarSeries featuring #MoTrPAC. Dr. Matthew Wheeler, Jimmy Zhen, & David Jimenez-Morales will present on the Data Hub, general MoTrPAC updates, upcoming data releases, and their pipelines/database structure #CFDE @CfdeWorkbench
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The Common Fund Data Ecosystem is hitting Denver this year, #ASHG2024. Visit our exhibition booth & learn about how the CFDE can support your research @CfdeWorkbench @NIH_CommonFund.
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The NIH Common Fund #Complement_ARIE program needs your help to build a new Data Hub and Coordinating Center for the #NewApproachMethodologies Common Fund program! Explore the Notice of Intent to Publish a #FundingOpportunity at go.nih.gov/K6kfgdb
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📢 Calling all researchers! The #dkNET Pilot #Funding Program invites multi-disciplinary teams to develop #AI foundation models for #Type2Diabetes. LOI Due: Oct 11, 2024 Application Due: Nov 12, 2024 Don’t miss out on this chance! Apply Now: dknet.org/about/ai-pilot
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Learn how @WVCTSI will bring clinical research opportunities to rural communities in West Virginia as one of three new national hubs of the #CAREforHealth network: wvctsi.org/news/story?hea…
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Join #NIH_CFDE on 8/30 at 1PM ET for an introduction webinar for Acute to #ChronicPain Signatures (@a2cps_pain). #A2CPS is an initiative to identify #biomarkers in pain science. Learn more: bit.ly/3vX6iJK
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Learn how our @somaticediting researchers & their colleagues engineered an adeno-associated virus (#AAV) that safely crosses the #BloodBrainBarrier, which can help prevent, treat, and cure brain disorders caused by genetic changes. @NIMHgov  nimh.nih.gov/news/science-n…
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Attending the #HealthITSummit24? Join Dr. Chris Kinsinger, #NIHCommonFund, on 9/19 for a panel discussion on #AI Adoption in the Health Care Ecosystem. #ArtificialIntelligence #Bridge2AI
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Check out this year's winners of the #NIH_SPARC codeathon, who made new #FAIRdata visualization platforms, analysis pipelines, and #AI tools to enhance use of SPARC #neuromodulation data. Learn more about the projects: bit.ly/3AEai3K
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PUBLICATIONS

Social Media

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.

This recent New York Times article sheds light on the widespread impact of chronic pain, affecting millions worldwide. The HEAL Initiative, a SPARC consortia partner, is advancing our understanding of pain. Read here: tab.so/4f8fd126 #NIH_SPARC #ChronicPain #OpenScience
2
Interested in applying to the #ComplementARIE #NewApproachMethodologies Data Hub and Coordinating Center #FundingOpp? Join the #InformationalWebinar on 2/13/25 at 11am ET! bit.ly/NDHCC_Webinar
0
A collaboration between researchers funded by the #NIHCommonFund #NIHHighRisk Program has uncovered genetic pathways that can protect #brain function and potentially inform new #Alzheimers therapies. go.nih.gov/rsizRAM
0
📺 This final clip from WCVB-Boston features an 11-year-old boy, Harry, who has experienced progressive loss of mobility without a known cause. There is an ongoing effort at the UDN Harvard site to diagnose Harry's decline. bit.ly/3PUdQ6F @UDNForg
1
Don't forget to tune in Tues. (1/21) at 3PM ET for this #NIHCommonFund #Bridge2AI discussion with Dr. Hernandez-Boussard (@StanfordMed). Learn more about how to improve #HealthEquity and patient outcomes through #ethicalAI (#AI/#ML). bit.ly/40ncneT
0
🚨 Join us for the first GlyGen Webinar of 2025! 🗓 Jan 28, 2025 | 🕒 10 AM EST 🎙 Dr. Zhiyong Lu, NIH 💡 Biomedical Text Mining for Literature Retrieval & Curation 🔗 gwu-edu.zoom.us/j/91498498310 Missed previous webinars? Check our YouTube: @glygenmyglygen4223 #glycotime
2
The Mutations in Time and Space conference will be held at the Broad Institute in Cambridge, MA, April 23-25, 2025. Registration is now live and abstract submissions are open until January 17th, 2025. broadinstitute.swoogo.com/mits2025/59707…
0
The 6th Bioelectronic Medicine Summit is an exciting upcoming event. The deadline to submit a poster has been extended to January 31, 2025, at 11:59 pm EST Learn more on the SPARC Portal: tab.so/ae13fa7a #OpenScience #NIH_SPARC @NorthwellHealth
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Join us on Thursday, January 23 at 2:00 PM ET for a virtual seminar featuring GeneSetCart, a web application for multi-omics AI-driven gene set analysis. Please register in advance for this virtual seminar: maayanlab.cloud/turl/6660bf4c
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#NIHCommonFund #NIH_SPARC researchers recorded nerve activity in patients with implanted #VagusNerveStimulation devices to treat #epilepsy. Learn more about how their results can help make stimulation therapies more accurate and effective: go.nih.gov/KffyY0f #VNS
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Our new perspective article describing the human and non-human primate developmental GTEx projects is now out in @Nature! We outline the scope, vision, opportunities and challenges of these projects here: nature.com/articles/s4158…
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📺 In this second clip from WCVB-Boston, a father and son's search for a diagnosis is shared. The family finally received answers through the UDN Harvard Team: ROSAH syndrome—a condition so rare that fewer than 100 cases exist worldwide. bit.ly/3PzYgwQ @UDNForg
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20 days till the 15th African Society of Human Genetics and the 1st Ugandan Society of Human Genetics and Bioinformatics Conference to take place in Entebbe, Uganda 🇺🇬 📎Theme: Harnessing Data Science and Artificial Intelligence for African Genomics Meet our keynote speakers!
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Do you want to explore the #chromatin of an organism? Join our expert instructors at #LowInput25, and learn how to use low input techniques to support your research at the gene and genome-wide level. ⏰ Application deadline: 11 February 2025 More info ➡️bit.ly/4g5vsHR
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There is still time to RSVP for the annual UCT Bongani Mayosi Memorial Lecture on Friday, 31 January 2025, at 18:00 SAST. The lecture will be presented by Professor Pumla Gobodo-Madikizela, titled "Ukuba Ngumntu: Love, Compassion, Solidarity." RSVP here: bit.ly/RSVP-BM-Lectur…
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The SPARC repository was developed to curate and publish high-quality datasets related to the autonomic nervous system. Now, all peripheral nervous system data can be hosted. Learn more and contribute your data on the SPARC Portal. sparc.science #NIH_SPARC #openscience
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Two months left to submit your #ComplementARIE #FundingOpportunity applications! Check out the #FundingOpp to see how you can be at the center of #NAMs research: go.nih.gov/3MBEmGy
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New findings from the #NIHCommonFund's #NIHHighRisk Program have found a genetic checkpoint in brain cells that could help stop the progression of #AlzheimersDisease. Learn more: go.nih.gov/rsizRAM
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📺 This clip from WCVB-Boston features researchers at Mass General Hospital, one of the clinical sites for the UDN Harvard team, who found the answer for a 19-year-old Rithvik: a vascular disease with genetic change in the non-coding region. bit.ly/4h8MwNk @UDNForg
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The #NIHCommonFund’s Venture Program Advancing Non-Invasive #OpticalImaging Approaches for Biological Systems (#VentureNIOI) initiative is underway! Learn more about this exciting opportunity: commonfund.nih.gov/venture/NIOI
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Did you know #measles is one of the most contagious diseases? If one person is infected with measles, nearly everyone around them who isn’t vaccinated will get infected. Measles spreads easily when a person who’s infected breathes, coughs or sneezes. It can affect anyone, but
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💡 This month's NHGRI Genomics Landscape edition featured researchers in the Undiagnosed Diseases Program. They discovered a new genetic condition: Morimoto-Ryu-Malicdan Neuromuscular Syndrome (MRMNS). 🔗 NHGRI Genomics Landscape- January 2025 Edition: bit.ly/4ahdd0a
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GlyGen.org release v2.7 is live! 🎉 New features: • New organism: Bovine • Full-screen detail tables • Dynamic list page columns • Enhanced download options Release notes: wiki.glygen.org #glycotime #bioinformatics
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Only 1 day left to register for the #ComplementARIE #FundingOpportunity informational webinar for #TechDev centers! Register now to hear from #NIH staff and ask questions: bit.ly/TechDevWebinar
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A traumatic event is a shocking, scary, or dangerous experience that can affect someone emotionally and physically. Learn what you can do to cope after a traumatic event and how to find help: go.nih.gov/wegYCgN
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📢Save the date! 3 weeks until the 15th @AfSHG_Genetics & the 1st Ugandan Society of Human Genetics and Bioinformatics Conference 📍Entebbe, Uganda🇺🇬 🗓️ 3-7 Feb 2025 📌 Harnessing Data Science and AI for African Genomics 🧬 afshg2025.org #AfSHG #Genetics #Africa
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One month left to submit your Letters of Intent to apply to the #ComplementARIE Data Hub and Coordinating Center #FundingOpportunity! Explore the announcement and submit your optional LOI before Feb 10 go.nih.gov/3MBEmGy
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New research from the #NIHCommonFund's #NIHHighRisk program is tracking #GutMicrobiome changes across stages of #ChronicFatigueSyndrome, potentially aiding clinicians in more accurate diagnoses. Learn more: go.nih.gov/xjlCyR8 #MEcfs #ChronicFatigue
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🎧 Tune In, another podcast is up! Christine McGarvey teamed up with the Living Well Pod! 💡✨ 🔗 Listen now on (bit.ly/3BZvK4v): Apple Podcasts | Spotify | Amazon Music | Overcast | iHeartRadio | Castro | Castbox | Goodpods
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📅⏰ Time is running out! AI-READI is looking for #research interns in allied health for the Aug 2025 academic year! Interns will advance the field of #AI (#ML) and generate #data for the larger #Bridge2AI program. Apply by 1/17 for this #Internship Opp. bit.ly/3UvuGeK
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Kickstart your New Year’s fitness goals with insights from Dr. Euan Ashley, of the #MoTrPAC Bioinformatics Center Team. He discusses how exercise transforms tissue at a molecular level, offering clues on how it reverses disease effects across the body: bit.ly/4h4EbdF
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Only one more week to register for the #NIHCommonFund’s Advancing Non-Invasive #OpticalImaging Approaches for Biological Systems #FundingOpportunity informational #webinar! Register now to get all the information needed to help you apply: bit.ly/NIOIWebinar
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Interested in responsible #AI for #healthcare? Tune in 1/21 at 3PM ET for this #NIHCommonFund #Bridge2AI discussion with staff from @StanfordMed about addressing #bias for #ethicalAI to improve #HealthEquity & patient outcomes. Learn more: bit.ly/40ncneT
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Check out the most recent UDN publication! ⭐️Key takeaway: FSASD is caused by #SLC17A5 variants, with this case revealing tissue-specific mosaicism for an intragenic deletion, explaining an atypical presentation. pubmed.ncbi.nlm.nih.gov/39742826/ @UDNForg
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The #NIHCommonFund #ComplementARIE program released a new #FundingOpportunity for a Coordinating Center and Data Hub! Learn how you can contribute to accelerating development of #NewApproachMethodologies today! go.nih.gov/3MBEmGy
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For undergraduates interested in cutting-edge senescence and aging research, this is a wonderful internship opportunity! Applications are due January 25th at link below. @sennetresearch
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Did you miss the abstract deadline? Late-breaking abstract submission for #APS2025 is now open! See SPARC at booth #1414. #NIH_SPARC #OpenScience @APSPhysiology bit.ly/4gZAYwM
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Check out the most recent UDN publication! ⭐️Key takeaway: #HADHB variants cause trifunctional protein deficiency with rare complications, including FSGS and bone marrow failure. pubmed.ncbi.nlm.nih.gov/39723123/ @UDNForg
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📢Reminder to apply for the GlyGen-CFDE Summer '25 @GWU - tinyurl.com/38b9xphz. 4 paid internship positions in DC - work with cutting-edge biodata tools & gain real research experience! Check the flyer below & apply by Jan 20 🧬 #Bioinformatics #STEM #glycotime
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Check out the most recent UDN publication! ⭐️Key takeaway: Rare damaging variants in #DDX53 are linked to autism, highlighting its role in genetic testing and challenges for murine ASD models. pubmed.ncbi.nlm.nih.gov/39706195/ @UDNForg
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Only 2 more weeks to register for the #NIHCommonFund’s Advancing Non-Invasive #OpticalImaging Approaches for Biological Systems #FundingOpportunity informational #webinar! Register now to learn more and participate in the Q&A session: bit.ly/NIOIWebinar
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Looking for a new resource to kickstart your 2025 research? Start with the Kids First Data Resource Portal! Build virtual cohorts from 188K+ pediatric samples, including whole genome sequencing & RNA-Sequencing data: rebrand.ly/mdfczmq #DataDriven #KidsFirstPortal
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Happy holidays from the GlyGen team! 🍡 May the last days of this year be filled with great joy and may the new year bring many opportunities for us to advance glycobiology together! #GlyGen #Glycoscience #glycotime
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Researchers! Discover new funding opportunities for #OpenScience & #OpenData projects on the SPARC Portal! The funding page is constantly updated with the latest announcements, so you don't miss out. Check it out here: bit.ly/SPARCfunding #NIH_SPARC #OpenData #OpenScience
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Check out the most recent UDN publication! ⭐️Key takeaway: A novel #KIF21A variant (p.Leu664Pro) disrupts #TUBB3 binding, causing neuropathy, brain anomalies, developmental delay, and strabismus without #CFEOM. @UDNForg pubmed.ncbi.nlm.nih.gov/39643435/
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RefMet molecule page layout now contains sections covering nomenclature, molecular descriptors,chemical/biochemical classification, distribution info for NMDR studies (including species and tissue plots), external identifiers to other databases and MS/NMR spectra of standards.
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Want to learn more about the #NIHCommonFund’s Advancing Non-Invasive #Optical #Imaging Approaches for Biological Systems #FundingOpportunity? Join the informational #webinar January 16th at 1 PM ET. Register: bit.ly/NIOIWebinar
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📅 Save the date for the #NIH_CFDE program's virtual workshop 1/31 from 10AM to 2PM ET! Discover how the #NIHCommonFund's #DataEcosystem empowers discovery through open access #data & resources for the #biomedical #research community. Register: bit.ly/3vX6iJK
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Are you interested in using #genomic and #phenotypic data for #pediatric research? A #FundingOpportunity from the #NIHCommonFund's Gabriella Miller #KidsFirst program co-led by @theNCI & @NICHD_NIH opens Jan 16th, 2025: go.nih.gov/oDE9bWv #BirthDefects #ChildhoodCancers
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Human tumor atlases and related data, including sequencing, imaging, and clinical information, are available to the community in the #HTAN Data Portal. data.humantumoratlas.org/explore
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The #NIH_CFDE is is making #NIHCommonFund data sets more findable, accessible, interoperable, and reusable (#FAIR)! Learn how @orau will support the #DataEcosystem through a #training center to help users work with the #data: bit.ly/4gj771t
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Are you a #biomedical researcher studying #NewApproachMethodologies? The NIH #ComplementARIE program wants to hear from you! Explore the new #FundingOpportunity to help build #TechnologyDevelopment centers for #NAMs go.nih.gov/gz5JDK6
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We’re thrilled to announce the launch of our new Blue Sky page! If you already have an account, follow us and share with your networks! Let's build and grow our community together. Stay connected for updates, collaborations, and more. 📌 Follow us at bsky.app/profile/dsi-af… 📌
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Check out the most recent UDN publication! ⭐️Key takeaway: Telehealth exams in the UDN showed strong consistency with in-person evaluations, minimal diagnostic misses, and high patient satisfaction. pubmed.ncbi.nlm.nih.gov/39629753/ @UDNForg
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Discover how mass spectrometry is revolutionizing vaccine development and infectious disease research! Watch Dr. John Cipollo's insightful GlyGen Webinar now: youtu.be/-5e8MaD8yKI Don't forget to follow and subscribe for more cutting-edge science content! 🔔 #FDA #glycotime
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#NIH_SPARC community members map pain-sensing nerves in rat hearts for the first time! This breakthrough paves the way for future research on heart disease. Learn more: tab.so/264edc30 #OpenScience
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🔬🧠 Oh synapse! Using #CryoET resources supported by #NIHCommonFund, researchers reveal how synapse shape drives #neuron communication at the molecular level. These findings could shed light on #brain disorders like #Alzheimers and #Parkinsons disease: go.nih.gov/RHERowD
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Did you miss the #KidsFirst New Research Gold Rush at #ASHG2024? Now you can feel like you're there. Watch the video NIH Research Gold Rush Poster Session & Networking Reception at ASHG 2024 rebrand.ly/kyrjxp3 @NIH_CommonFund
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📢 Did you forget to submit your #AI (#ArtificialIntelligence) abstracts for the upcoming @Bridge2aiVoice Symposium? You're in luck, the deadline has been extended to 12/23! Don't miss your chance to submit to this #NIHCommonFund #Bridge2AI event.
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Interested in applying to the #ComplementARIE #NewApproachMethodologies Technology Development Centers #FundingOpp? Join the informational #webinar on 1/14/25 at 11am ET! bit.ly/TechDevWebinar
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Researchers from #NIH_SPARC created the first maps of #pain-sensing neurons in the #heart, laying the foundation to understand how these nerves change in #HeartDisease. SPARC is supported by the #NIHCommonFund. Learn more on the @sparc_science website: sparc.science/news-and-event…
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We’re grateful for our amazing research community and the partners who drive pediatric research forward every day. Thank you for joining us on this mission to improve the lives of children worldwide. Here’s to even more discoveries in the New Year! #Community #KidsFirstDRC
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Exciting News!!! 🎉The 8th Release of the Human Reference Atlas (v2.2) is now available! See what's new in HRA v2.2 in 8th Release Notes📷Visit: humanatlas.io for the new and updated data!! @NIH @_hubmap @AndreasBueckle @katycns @_bh2
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The #NIHCommonFund’s #NIH_SPARC program is advancing #OpenScience to catalyze new #neuromodulation discoveries. Learn how the SPARC Portal provides cutting-edge information & tools for advancing bioelectronic medicine in a recent webinar featuring a @sparc_science researcher!
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Participant 229: female, age 4, with low muscle tone, motor delays, speech and language delays, and autism and a variant in RNU4-2 gene. Reach out if you know of others with similar symptoms and variant! undiagnosed.hms.harvard.edu/participants/p…
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Exciting News! The deadline for the Call for Science for the 2025 Voice AI Symposium has been extended to December 23, 2024! (eventsquid.com/event/26217) Bridge2AI-Voice is part of the @Bridge2AI program funded by the NIH Common Fund.
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The #NIHCommonFund #ComplementARIE program released a new #FundingOpportunity! Explore the announcement and begin preparing your applications now: go.nih.gov/gz5JDK6
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Cell atlasing got the weight of the world on your shoulders? Explore the Atlases Galore & Method of the Year 2024: #SpatialProteomics @naturemethods articles out this week if you need a roadmap to success! Like their namesake, these atlases will hold up well! #CellMapCrew #HuBMAP
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The #NIHCommonFund is hosting a workshop to discuss enabling #PrecisionMedicine with #AI through the integration of #MedicalImaging with other #Data types! Join the virtual interactive discussion 3/11-3/12: go.nih.gov/awiS2id
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📢 Time is running out! Submit your #AI (#ArtificialIntelligence) abstracts for the upcoming @Bridge2aiVoice Symposium. #Bridge2AI #NIHCommonFund
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8 billion. It's just a number. Today, our 3D tranche browser shows 8 billion* purchasable molecules in biologically relevant, docking-ready 3D formats. cartblanche22.docking.org/tranches/3d * Yes, yes, a wee bit of double counting. But, 8 billion!
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Older adults face growing housing instability, with 168,000 over 65 evicted yearly. A new study by the #NIHCommonFund’s #NIHFIRST program shows that home foreclosures may speed #MemoryDecline. Learn how #HousingInstability impacts health & cognition: go.nih.gov/9fiR3D9
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Are you a #biomedical #researcher interested in human voice #data paired with other clinical information? Learn about this data set from the #NIHCommonFund #Bridge2AI's Voice #AI (@Bridge2aiVoice) project that aims to develop #biomarkers for disease using the human voice data
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Ready to register for #APS2025? Don't forget to stop by the SPARC booth (#1414) in April. We'll be there to answer your questions and share the latest in open science. #NIH_SPARC #OpenScience @APSPhysiology bit.ly/4gZAYwM
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Tune in tomorrow (12/10) at 3 PM ET for the #NIHCommonFund's #Bridge2AI program discussion w/ Dr. Michelle Mello (@StanfordLaw & @StanfordMed) to hear about emerging legal trends in using #AI in #PatientCare. Learn more: bit.ly/3Vh1Y1F
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Today the week long @eLwazi_ODSP /@DSI_Africa Train-the-Trainer workshop commences! Workshop will cover using the eLwazi training workflow, developing competency-based curricula and managing computational training environments Looking forward to the impactful week!
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SPARC Community member Dr. Robert Gereau co-led a project that developed a promising implantable device for reversing opioid overdoses. This is a significant advancement in the effort to combat opioid misuse disorder. #NIH_SPARC #opioidcrisis #OpenScience science.org/doi/10.1126/sc…
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Replying to @naturemethods
This month’s Technology Feature by Vivien Marx @metricausa highlights diverse international atlas projects, where they are now, and where they may be going in the future. nature.com/articles/s4159…
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The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳 For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread. nature.com/articles/s4159…
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Just a few days left to register for the #NuclearArchitecture Meeting hosted by #4DNucleome! Join us in San Diego, CA on December 11-13, 2024. The deadline to register is Monday, December 2nd. Register today! bit.ly/3X9gha0
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#NutritionforPrecisionHealth is advancing precision #nutrition and was featured on @CBSSunday! The study is led by a coalition of NIH partners, including #NIHCommonFund, the Office of Nutrition Research, and @AllofUsResearch. Enrollment is open! Watch here allof-us.org/3UY1zkm
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Do you develop and market scientific tools? Join us tomorrow, November 22nd from 1-2 PM ET to learn various strategies from #COMPA and @MetaCell during our #CFDEPublicWebinarSeries. Register here: broadinstitute.zoom.us/webinar/regist… @CfdeWorkbench @NIH_CommonFund
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The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC https://t.co/tgdMOPiAb6
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It's almost time for #ASHG2024! Reminder, we have limited availability for exclusive 1:1 sessions at the #CFDE booth, grab yours before it's too late here: forms.gle/ioovRvfx3NA7SG…. Save travels and see you at Booth 571! @CfdeWorkbench @NIH_CommonFund
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Mark your calendars because we are ONE WEEK away from our #ASHG2024 Ancillary Session on the #CFDE! We look forward to seeing you all in Denver! @CfdeWorkbench @NIH_CommonFund @motrpac
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We are representing the Common Fund Data Ecosystem & debuting our #KnowledgeCenter Resource a #ASHG2024. Come by whenever (sign up below) to learn about how these 14 DCCs & 5 centers within the CFDE can be useful to you as a human geneticist @NIH_CommonFund @CfdeWorkbench
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Join us in two weeks ✌️ at our #ASHG2024 ancillary session: A Human Geneticists' Guide to the Common Fund Data Ecosystem! Hear perspectives by the @NIH_CommonFund, us at the KC, @CfdeWorkbench, @motrpac and @GTExPortal. Hope to see you there!
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Join us this Friday for the #CFDEPublicWebinarSeries featuring #MoTrPAC. Dr. Matthew Wheeler, Jimmy Zhen, & David Jimenez-Morales will present on the Data Hub, general MoTrPAC updates, upcoming data releases, and their pipelines/database structure #CFDE @CfdeWorkbench
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The Common Fund Data Ecosystem is hitting Denver this year, #ASHG2024. Visit our exhibition booth & learn about how the CFDE can support your research @CfdeWorkbench @NIH_CommonFund.
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The NIH Common Fund #Complement_ARIE program needs your help to build a new Data Hub and Coordinating Center for the #NewApproachMethodologies Common Fund program! Explore the Notice of Intent to Publish a #FundingOpportunity at go.nih.gov/K6kfgdb
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📢 Calling all researchers! The #dkNET Pilot #Funding Program invites multi-disciplinary teams to develop #AI foundation models for #Type2Diabetes. LOI Due: Oct 11, 2024 Application Due: Nov 12, 2024 Don’t miss out on this chance! Apply Now: dknet.org/about/ai-pilot
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Learn how @WVCTSI will bring clinical research opportunities to rural communities in West Virginia as one of three new national hubs of the #CAREforHealth network: wvctsi.org/news/story?hea…
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Join #NIH_CFDE on 8/30 at 1PM ET for an introduction webinar for Acute to #ChronicPain Signatures (@a2cps_pain). #A2CPS is an initiative to identify #biomarkers in pain science. Learn more: bit.ly/3vX6iJK
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Learn how our @somaticediting researchers & their colleagues engineered an adeno-associated virus (#AAV) that safely crosses the #BloodBrainBarrier, which can help prevent, treat, and cure brain disorders caused by genetic changes. @NIMHgov  nimh.nih.gov/news/science-n…
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Attending the #HealthITSummit24? Join Dr. Chris Kinsinger, #NIHCommonFund, on 9/19 for a panel discussion on #AI Adoption in the Health Care Ecosystem. #ArtificialIntelligence #Bridge2AI
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Check out this year's winners of the #NIH_SPARC codeathon, who made new #FAIRdata visualization platforms, analysis pipelines, and #AI tools to enhance use of SPARC #neuromodulation data. Learn more about the projects: bit.ly/3AEai3K
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