Discover, Analyze, and Integrate NIH Common Fund Data

The NIH Common Fund programs generate diverse datasets from a variety of projects ranging from genomics to phenotypes. The Common Fund Data Ecosystem (CFDE) aims to facilitate improved discovery, reuse, integration, and analyses of these datasets to form novel hypothesis for accelerating discoveries in biomedical research.

The Common Fund Data Ecosystem (CFDE) aims to enable broad use of data generated by Common Fund Programs to accelerate hypothesis generation and discovery.

TRAINING & OUTREACH
CFDE Webinar Series

The CFDE Webinar Series brings the varied programs of the CFDE to the broad biomedical research community. Join us on the last Friday of each month at 1-2 PM ET to learn the science behind the research programs that comprise CFDE, as well as about the CFDE as a whole and its coordination Centers.

Starts: May 31, 2024

Common Fund programs partnered with the CFDE

The NIH Common Fund is a funding entity within the NIH that supports bold scientific programs that catalyze discovery across all biomedical and behavioral research.

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Documentation

Learn more about the standards and protocols for accessing and submitting data to the portal

Documentation

Learn more about the standards and protocols for accessing and submitting data to the portal
fair

Making data more FAIR

The Data Resource and Knowledge Centers are dedicated to enhancing the accessibility and utility of Common Fund-generated data and resources, striving to uphold the FAIR principles. This commitment serves as a catalyst for groundbreaking biomedical discoveries, fostering synergies across the diverse datasets within the Common Fund ecosystem, thereby unlocking novel avenues of research and innovation.
  • Findable
  • Accessible
  • Interoperable
  • Reusable

Social Media

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.

Happy #AfricaDay2024!🌍 Celebrating the formation of the OAU in 1963 & the remarkable journey of African unity. Proud to recognize the transformative contributions of our H3Africa and @DSI_Africa teams in genomics and data science! 🧬🔍 #AfricanUnion #H3Africa #DSIAfrica #NIH
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If you have ideas for how to make #neuromodulation data more #FAIR, submit your idea for the #NIH_SPARC annual #codeathon by June 8! bit.ly/436EHlt
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Early bird registration for ISAN 2024 closes on Monday, May 27th. Register today! bit.ly/4byvjKU #NIH_SPARC #OpenData #ISAN2024 #OpenScience
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There are now over 7,000 publications citing the IMPC! These publications include studies utilising mouse mutant products created by IMPC centers and the freely accessible phenotyping data on the IMPC website. For more: mousephenotype.org/news/a-new-mil… #IMPC #publications #mousegenetics
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The recordings of the Virtual GlyGen and Common Fund Data Ecosystem (CFDE) Bioinformatics Workshop on May 1st 2024 has been released on YouTube. Have a look to learn about Bioinformatics, GlyGen and CFDE. youtube.com/playlist?list=…
1
Interested in learning about #biomedical #datasets? Join the #NIH_CFDE program for an upcoming #webinar to learn about #data resources and a new platform for querying the Gene Expression Omnibus (GEO) with #gene sets on Fri 5/31 at 1PM ET. Learn more: bit.ly/3vX6iJK
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Project Pitch is currently open for the 2024 SPARC FAIR Codeathon! Show off your coding skills in this 3-day virtual challenge! It's free to enter, and there's $50k up for grabs. Leverage SPARC tools and data in innovative ways. bit.ly/436EHlt #data #openscience #coding
0
Don't miss valuable updates from NIH and extensive funding opportunities at the #KidsFirst Spring Webinar! Join Dr. Marcia Fournier as she explores what’s latest and greatest with the Kids First program. Save your spot: buff.ly/3JYlslA @NIH_CommonFund #togetherwerise
1
Join the second @NIH_CommonFund Public Webinar on Friday, May 31st. Learn about new bioinformatics tools from the LINCS DCC and the CFDE DRC, presented by Dr. Avi Ma’ayan, and discover the RummaGEO search engine with Giacomo Marino. Register now: bit.ly/4bNPswb #OpenData
0
Join Dr. David Higgins & Dr. Jared Rozowsky for an impactful live demo at the #KidsFirst Spring Webinar. Learn how the new variant search tool expands data exploration. Plus, discover how to perform cloud-based analysis with CAVATICA: buff.ly/3JYlslA @NIH_CommonFund
0
One Week Away! Don't miss the #KidsFirst and @kidsfirstDRC Spring Webinar: Big Data Dialogue, The Next Catalyst for Cures, May 29 from 11-12PM ET. Live demos and insightful discussions on transformative #pediatric research await. Register today: nih.zoomgov.com/meeting/regist…
0
Happening today at 12pm ET! Join us for a technical assistance webinar to discuss a #FundingOpportunity on Integrating #ClinicalResearch into #PrimaryCare. bit.ly/3Uw05gk
1
Abstract submission for the 2024 INCF Neuroinformatics Assembly closes TOMORROW. Don't miss your chance to participate! Register now: bit.ly/4dLheLI #NIH_SPARC @INCForg #OpenData
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Discover how Dr. Soumya Rao, specializing in oral and craniofacial sciences and working in Dr. Tim Cox's lab, leverages the new variant search tool for scientific breakthroughs at the #KidsFirst Spring Webinar. Don't miss her insights: buff.ly/3JYlslA @NIH_CommonFund
2
Are you interested in #genomics research? This @Nature article highlights how #SMaHTnetwork researchers developed an approach that links #SomaticMutations to alterations in chromatin accessibility at the single cell level. Learn more: pubmed.ncbi.nlm.nih.gov/38720070/
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It’s not too late to register for technical webinar to discuss Integrating #Clinical Research into #PrimaryCare. Join us! bit.ly/3Uw05gk
1
NIH Common Fund heard what community partners had to say! Join us as we discuss a new vision for NIH’s efforts to bring #ClinicalResearch to #PrimaryCare. Register now For the June 7th public webinar: bit.ly/3R8DIwD
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📢D-14📢 Deadline approaching: @PCORI seeks to fund patient-centered CER studies focused on rare diseases! Up to $100M in available funding! Explore new PFA today and see how you can take the first step: pcori.me/3SFCmJlUp to $100M in available funding!
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On Friday 5/31 @ 1 PM ET, members of the @CfdeWorkbench will introduce new tools to query the @LINCSProgram L1000 data and gene expression signatures automatically extracted from @NCBI #GEO rummageo.com register: cfde.info
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Replying to @gioberardi1
@gioberardi1 presenting about @a2cps_pain and his secondary analysis on movement evoked pain at our annual retreat. @SutherlandPhD #painscience https://t.co/122vx4Kp3u
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#ICYMI a very nice Commentary on our new paper in @PAINthejournal by Patrick Finan @p_fi on statistical analyses of patient-reported acute and chronic pain journals.lww.com/pain/fulltext/…
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Children of all backgrounds deserve a fighting chance against Wilms Tumor. Dr. Andrew L. Hong, a 2023 #KidsFirst X01 awardee, leads a large-scale study looking for answers with a diverse patient population. Join us in our search for a cure. #WilmsTumor #CancerResearch
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Don't miss out! Join us tomorrow (5/21) at 3PM for the #Bridge2AI AI READI monthly webinar! Learn about the rapidly evolving legal and regulatory landscape of #AITechnology for #healthcare (#medicine). Join by Zoom: bit.ly/4arolWV
0
Interested in #NewApproachMethodologies (NAMs)? Learn about the innovative science proposed by the #ComplementARIE Challenge prize winners that could advance the field of #NAMs: go.nih.gov/Complement-ARI…
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Only one week left to submit your application to the #NIHCommonFund’s #Oculomics #ResearchOpportunity Announcement. Contribute to the creation of new #ocular imaging technology today!: commonfund.nih.gov/venture/oculom…
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Missed this webinar, From Models to Heartbeats? No worries! You can watch it anytime on our YouTube Channel. Check it out here: youtube.com/watch?v=jo9aXw… @MedUni_Wien #NIH_SPARC #opendata #modeling
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Don't forget to register for this webinar hosted by @NatEyeInstitute featuring #Bridge2AI Investigator Dr. Lee (@aaronylee) as he talks about his work on creating an ethically sourced #AI #dataset for #Type2Diabetes (#salutogenesis). Today at 2:30PM ET: go.nih.gov/hu5Vffe
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Someone in @gly_gen "celebrates" National Bike to Work Day. #NationalBikeToWorkDay
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Check out this APS webinar on our YouTube channel. In this webinar, Maryann Martone, PhD, and Peter Hunter, PhD, explore the SCKAN knowledge base, SPARC Knowledge Graph and uses of the portal for a wider range of physiological processes. bit.ly/3TyOm1C @APSPhysiology
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Tune in 5/20 at 2:30 PM ET! #Bridge2AI Investigator Dr. Lee (@aaronylee) will share insights from his work on creating an ethically-sourced #AI #dataset for #Type2Diabetes (#salutogenesis). Register today for this webinar hosted by @NatEyeInstitute: bit.ly/3K7Pxik
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Plenty of awards for MC-IU at the HuBMAP Annual Meeting! Amazing work CNS team! @katycns @AndreasBueckle @_hubmap @IULuddy
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Unlock momentous insights with Dr. David Teachey, specializing in cancer and blood diseases, at the #KidsFirst Spring Webinar! He brings epic scientific work on Leukemia using Kids First data to the panel discussion. Register now: buff.ly/3JYlslA @NIH_CommonFund
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Unlocking the mysteries of childhood diseases by studying #ChildhoodCancer and #CongenitalDisorders together, #KidsFirstDRC and #KidsFirst researchers find common threads in the body's code. Together, we can fight for healthier futures.
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Project Pitch is now open for the 2024 SPARC FAIR Codeathon! Show off your coding skills in this 3-day virtual challenge! It's free to enter, and there's $50k up for grabs. Leverage SPARC tools and data in innovative ways. bit.ly/436EHlt #data #openscience #python #code
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New from #NIHHighRisk: scientists have found a new way to grow #kidney cells that can help learn more about important #genes and find new treatments for #KidneyDisease. Read more in the highlight: go.nih.gov/Ivt7Qfc
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Register today for a technical webinar on May 22nd at noon ET. We will be discussing the open Research Opportunity Announcement for integrating #ClinicalResearch into #PrimaryCare. Register now bit.ly/3Uw05gk
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Want to learn more about how to measure and monitor #representation in #biomedical #datasets? Then join #Bridge2AI project staff as we tune in on 5/21 at 3PM ET to learn about the @MIDRC_ #Diversity Calculator. Register: us06web.zoom.us/webinar/regist…
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Did you miss the webinar on the implementation of the simplified review framework for RPGs? The resources are now available! ▶ nexus.od.nih.gov/all/2024/05/15…
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#KidsFirst virtual office hours are now held in collaboration with @velseraofficial and the #INCLUDEDCC. Tomorrow, get your technical questions answered by our experts and learn more about leveraging these great resources: buff.ly/3qxhLwy @NIH_CommonFund
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Early bird registration for ISAN closes on Tuesday, May 27th. Don't miss out—register today! bit.ly/44IlHdP #NIH_SPARC #OpenData #ISAN2024 #OpenScience
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Join us for the #KidsFirstDRC Spring Webinar on May 29 @ 11 A.M. EDT and get an exclusive sneak peek at our new portal! Don't miss out - register now: buff.ly/3JYlslA @NIH_CommonFund
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Join #KidsFirst and @kidsfirstDRC on May 29 from 11 AM-12PM ET for a transformative look into #pediatric research at the Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures.” Live demos & insightful discussions await. Register: nih.zoomgov.com/meeting/regist… #TogetherWeRise
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Are you interested in #neurosurgery research? Check out this article by our #NIHHighRisk Research Program #NewInnovator awardee Shadi Dayeh and colleagues who developed a new tool to visualize brain activity. Learn more: pubmed.ncbi.nlm.nih.gov/38657026/
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CNS- @AndreasBueckle at the HuBMAP All Hands Meeting: VisArts Center, Rockville, MD, May 14-16, 2024 showing what CNS is creating with the with Apple Vision Pro. hubmapconsortium.org @_hubmap @IULuddy
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Don’t miss your chance to take a PUPPY (#PuppyCam) break for your #MentalHealth (@NIMHgov). Try it out in honor of #MentalHealthAwarenessMonth
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This just in: #NIHCommonFund's Acute to Chronic Pain Signatures #A2CPS has published a paper on ways researchers can standardize and analyze #pain scores to make #ChronicPain research "clinically meaningful"!
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The #NIHCommonFund is hosting a public half-day webinar on 6/7, starting at 10am ET to review results of #ListeningSessions to inform NIH’s vision for the future of #ClinicalResearch in #PrimaryCare. Want to hear what the participants said? Register today! bit.ly/3R8DIwD
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Did you miss today’s technical assistance webinar for integrating #ClinicalResearch into #PrimaryCare? It’s not too late to register to attend the Technical Assistance Webinar scheduled for May 22nd at 12pm ET. Register today! bit.ly/3Uw05gk
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Come join us for a webinar presented by Dr. Yan Li on Friday, May 17, 2024 to learn more about this useful resource "Beta Cell Hub"! bit.ly/3wwLBVr @dkNET_Info #NIH_SPARC #opendata
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This #BrainTumorAwarenessMonth, #KidsFirst is using the power of data. Our curated datasets include information on #Cancer predisposition, helping researchers identify genes linked to a higher risk of brain tumors. Earlier detection saves lives. #KidsFirstDRC #CuresStartHere
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#PrimaryCare is intended to be the setting for #prevention and everyday health care. Read about a new opportunity to explore the integration of #ClinicalResearch into everyday care: go.nih.gov/ExTIXPY
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Explore the innovative science proposed by the #ComplementARIE Challenge prize winners. Read the unconventional ideas from challenge solvers using #insilico #inchemico and #invitro approaches to #NewApproachMethodologies: go.nih.gov/Complement-ARI…
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It's been two weeks since the first ever IMPC Spring meeting that took place in South Africa. If you want to have more insight on the meeting, read our most recent news letter post! mousephenotype.org/news/beyond-th… #IMPC #BeyondtheGenome #IMPCConferences24
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Join us on 5/21 at 3PM ET for the #Bridge2AI AI READI (#Salutogenesis) monthly webinar! Learn about the rapidly evolving legal and regulatory landscape of #AITechnology for #healthcare (#medicine). Join by Zoom: bit.ly/4arolWV.
0
Exciting news! ARPA-H has unveiled 2 new funding opportunities: the LIGHT program and Mission Office-specific ISOs. Learn more on our Funding Announcements page. Apply today! bit.ly/SPARCfunding @ARPA_H #opendata #funding #NIH_SPARC #OpenScience
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Exciting news! A2CPS has published online in @PAINthejournal with a statistical analysis of reports of acute and #chronicpain journals.lww.com/pain/abstract/…
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It’s not too late to register for the first technical assistance webinar to discuss Integrating #Clinical Research into #PrimaryCare. Join us tomorrow! bit.ly/3UP0wUi
0
Join us on Thursday, May 16 from 1-2 PM ET for a webinar on Sharing Data in HEAL-compliant Repositories. Featuring insight from Dr. Nora Volkow of NIDA, HEAL Steward Allie Gartland-Gray, and HEAL Platform's Dr. Brienna Larrick. Live Q&A included. bit.ly/4bvm5i9 #opendata
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Join us on May 29 @ 11 A.M. ET for a transformative look into pediatric research at the #KidsFirst Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures.” Live demos and insightful discussions await. Secure your spot now: buff.ly/3JYlslA @NIH_CommonFund
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Don't forget to join @Bridge2aiVoice for this webinar on #Voice (#AI) #Biomarkers and #Validity on 5/14 at 3:30 PM ET. Log in to MS Teams: bit.ly/3WzI1Ep. ID: 21218237539. Passcode: JSTvnL. #Bridge2AI
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Only two days left to apply to the #NIHCommonFund’s SysBio Venture Initiative #ResearchOpportunity Announcement! Submit your applications now: commonfund.nih.gov/venture/sysbio
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Only two more weeks to apply to the #NIHCommonFund’s #Oculomics #ResearchOpportunity Announcement. Submit your applications today!: commonfund.nih.gov/venture/oculom…
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🔔 Have questions about PCORI’s new funding opp: Addressing Rare Diseases? Attend the Applicant Town Hall on May 14 & ask the experts. Register now: pcori.me/3OGOn02
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Did you miss the SPARC #Python Webinar? Stream it now on YouTube! Se the new SPARC Python Client and learn to navigate public datasets, download #data, and leverage the Open Simulation Platform for Advanced #Research (o²S²PARC) for data transformation. bit.ly/3UrXdRi
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Register today to join the conversation May 29th, 11AM-12PM ET! We'll be diving into #research for kids at the #KidsFirst Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures,” Live demos and insightful discussions are ahead. Register today! nih.zoomgov.com/meeting/regist…
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Join @Bridge2aiVoice for this webinar on #Voice (#AI) #Biomarkers and #Validity on 5/14 at 3:30 PM ET. Log in to MS Teams: bit.ly/3WzI1Ep. ID: 21218237539. Passcode: JSTvnL. #Bridge2AI
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Don’t forget to join us for a technical assistance webinar on integrating #ClinicalResearch into #PrimaryCare settings. It’s happening on Tuesday, May 14, at noon ET. Register today bit.ly/3UP0wUi
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Do you want to communicate with your inner cellf, but can't find the way? Then check out the new maps published in @CellCellPress by @KaiTanLab1 @ChildrensPhila, showing where different cell types reside in bone marrow, digging deep ditches to find the niches!
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📸 Got an image that inspires? We're seeking captivating captures that showcase the artistry of #spatialbiology. Submit your mesmerizing tissue images using Akoya's technology for the chance to be featured on our platforms and a $100 Amazon gift card: bit.ly/3TfdR7x
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Bringing together childhood cancer and congenital disorder registries can save lives. Hear what AACR NIH booth presenter Dr. Adam Resnick said about how collaboration transforms diagnostics and treatment: buff.ly/3QzC2fi #KidsFirstDRC
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🔬 Congratulations to Dr. William Gahl and the entire UDP team for this feature in the Washingtonian magazine! Access the article in Washingtonian's March 2024 Issue: Cool Jobs at bit.ly/3wufQME #UDN #UDP #Genetics #RareDiseases #NIH #MedicalMysteries
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Announcing the #ComplementARIE Challenge Prize winners! Read about these out-of-the box ideas that could advance the field of #NewApproachMethodologies and how they will help inform the Complement-ARIE program: go.nih.gov/Complement-ARI…
3
🚀 Funding Opportunity Alert! @NIH_CommonFund seeks applications (RFA-RM-24-006) for Pilot Projects enhancing utility & usage of Common Fund data sets. Early Stage Investigators encouraged! #ResearchFunding #NIH Deadline: June 27, 2024 Details: bit.ly/3JflHbj
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A new #FundingAnnouncement looks to increase access to #ClinicalResearch by bringing it to #PrimaryCare settings. Learn more about the new opportunity: go.nih.gov/xS0qccThttps:/…
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Register for a Technical assistance webinar on 5/14/24 at 12PM ET to learn more about an NIH #FundingOpportunity to enable access to #ClinicalResearch: bit.ly/3UP0wUi
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#ICYMI Register by tomorrow, May 10th for the #Transformative Research to Address #HealthDisparities and Advance #HealthEquity (THD) Program's webinar highlighting three of their research projects!
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Why do phosphate-containing medications cause itch? MRGPRX4! Latest @RothLabUNC @Cannabatopia and Dong Lab (HHMI/Hopkins) collaboration: doi.org/10.1126/scitra…
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Rare GPR37L1 Variants Reveal Potential Association between GPR37L1 and Disorders of Anxiety and Migraine jneurosci.org/content/44/19/…
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Learn more about last week's 2024 @Bridge2aiVoice Symposium and the impact of #AI (#ML) in voice #biomarker research. #Bridge2AI
0
Come join us for a webinar presented by Dr. Andrew Schroeder on Friday, May 10, 2024 to learn more about this useful resource "4DN Data Portal"! bit.ly/3UoNsTW @dkNET_Info #NIH_SPARC #opendata
2
Looking for ways to learn more about biomedical data? Well how about signing up for an online course offered by CFDE with IDG scientific use cases. Starts June 3rd! Learn more at: datascience.unm.edu/isbdscourse_cf…
1
🚨Data release alert! Data release 21 is live on the IMPC web portal. Phenotyping data is available for 8,707 genes with around 2.4 million new data points! For more: mousephenotype.org/news/data-rele… #mousegenetics #data #IMPC #genetics
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The UDN is hosting a virtual educational course titled “Evaluation of Undiagnosed and Rare Conditions”. This training program aims to teach methods of undiagnosed patient evaluation to students, clinicians, and researchers. Register for the course here: tinyurl.com/yckeupmh
1
New study highlights bone marrow atlas from @CHOP_Research & @PennMedicine offers unprecedented window into blood production. This could lead to major advances in treating bone marrow disorders: ms.spr.ly/6016YpTRM.
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Rummagene is a search engine for gene sets, created by extracting human and mouse gene sets from supporting materials of >120,000 biomedical research publications: nature.com/articles/s4200… @AviMaayan @MaayanLab
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Always love to see new things from @AviMaayan et al. Rummaging through online papers in order to scrape the as of yet inaccessible supp tables is super smart. And such a good name (obviously). nature.com/articles/s4200…
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Want to see how spatial profiling techniques have given biologists, including @_hubmap’s own Dr. Andrea Radtke from the #GermainLab and @NIAIDNews, never before seen views of cells and tissues? Then set your sights here: optica-opn.org/home/articles/…
2
Planning for #USASP2024? Be sure to catch #A2CPS investigator @torwager at a symposium, "Unlocking the Social Neuroscience of Pain: Trust, Learning, and Support" with Luana Colloca and Przemysław Bąbel on Mon at 3:30 - see you there!
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📢 dkNET #Webinar Slides Now Available! #dkNET has slides available from the webinar on March 22, 2024 "Tabula Sapiens" presented by Dr. Angela Oliveira Pisco. #cellulardiversity #genome #humanatlas #transcriptome #geneexpression Slide link: slideshare.net/slideshow/dkne…
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Thank you, @AACR, for another terrific annual meeting. We enjoyed sharing our research, learning from others, and connecting with the community of people working to advance #CancerResearch. We look forward to seeing you again next year! #AACR24 #NCIFuture
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The NIH Common Fund is requesting research applications encouraging the use of Common Fund data. To be eligible, the proposed research must substantially leverage data from at least two Common Fund programs. grants.nih.gov/grants/guide/r…
4
Out of the kidney-ness of our hearts, here is a lightsheet image from @_hubmap researcher Liam McLaughlin in Sanjay Jain's lab @WUSTL of a kidney's structure. This image shows arteries & other vessels bringing blood to the nerves & glomeruli throughout. It’s un-bean-lievable!
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Did you miss the #KidsFirst Pediatric Data Hour at #AARC24? It’s not too late to visit booth #3759 for a demo of the #Data Portal with the @kidsfirstDRC.
2
Have you registered for our #webinar on “Unlocking the Power of FAIR Data Sharing With ImmPort”? Check out the #dkNET blog below for info: dknet.org/about/blog/2729 #datasharing #FAIRdata #immunology #datamanagement
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CBTN posters represented at #AACR2024 in San Diego! Dr. Ali Nabavizadeh of @ChildrensPhila, along with the translational imaging research team, utilize imaging and advanced bioinformatics methods to gain insights about pediatric #LGG biology to improve outcomes. #wearecbtn
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Have you registered for next week's webinar on how the new simplified review framework will impact funding opportunities? 💭 Join NIH experts for live Q&A: go.nih.gov/S4hfVUq #NIHgrantsevents
5

Social Media

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.

Happy #AfricaDay2024!🌍 Celebrating the formation of the OAU in 1963 & the remarkable journey of African unity. Proud to recognize the transformative contributions of our H3Africa and @DSI_Africa teams in genomics and data science! 🧬🔍 #AfricanUnion #H3Africa #DSIAfrica #NIH
2
If you have ideas for how to make #neuromodulation data more #FAIR, submit your idea for the #NIH_SPARC annual #codeathon by June 8! bit.ly/436EHlt
3
Early bird registration for ISAN 2024 closes on Monday, May 27th. Register today! bit.ly/4byvjKU #NIH_SPARC #OpenData #ISAN2024 #OpenScience
0
There are now over 7,000 publications citing the IMPC! These publications include studies utilising mouse mutant products created by IMPC centers and the freely accessible phenotyping data on the IMPC website. For more: mousephenotype.org/news/a-new-mil… #IMPC #publications #mousegenetics
4
The recordings of the Virtual GlyGen and Common Fund Data Ecosystem (CFDE) Bioinformatics Workshop on May 1st 2024 has been released on YouTube. Have a look to learn about Bioinformatics, GlyGen and CFDE. youtube.com/playlist?list=…
1
Interested in learning about #biomedical #datasets? Join the #NIH_CFDE program for an upcoming #webinar to learn about #data resources and a new platform for querying the Gene Expression Omnibus (GEO) with #gene sets on Fri 5/31 at 1PM ET. Learn more: bit.ly/3vX6iJK
2
Project Pitch is currently open for the 2024 SPARC FAIR Codeathon! Show off your coding skills in this 3-day virtual challenge! It's free to enter, and there's $50k up for grabs. Leverage SPARC tools and data in innovative ways. bit.ly/436EHlt #data #openscience #coding
0
Don't miss valuable updates from NIH and extensive funding opportunities at the #KidsFirst Spring Webinar! Join Dr. Marcia Fournier as she explores what’s latest and greatest with the Kids First program. Save your spot: buff.ly/3JYlslA @NIH_CommonFund #togetherwerise
1
Join the second @NIH_CommonFund Public Webinar on Friday, May 31st. Learn about new bioinformatics tools from the LINCS DCC and the CFDE DRC, presented by Dr. Avi Ma’ayan, and discover the RummaGEO search engine with Giacomo Marino. Register now: bit.ly/4bNPswb #OpenData
0
Join Dr. David Higgins & Dr. Jared Rozowsky for an impactful live demo at the #KidsFirst Spring Webinar. Learn how the new variant search tool expands data exploration. Plus, discover how to perform cloud-based analysis with CAVATICA: buff.ly/3JYlslA @NIH_CommonFund
0
One Week Away! Don't miss the #KidsFirst and @kidsfirstDRC Spring Webinar: Big Data Dialogue, The Next Catalyst for Cures, May 29 from 11-12PM ET. Live demos and insightful discussions on transformative #pediatric research await. Register today: nih.zoomgov.com/meeting/regist…
0
Happening today at 12pm ET! Join us for a technical assistance webinar to discuss a #FundingOpportunity on Integrating #ClinicalResearch into #PrimaryCare. bit.ly/3Uw05gk
1
Abstract submission for the 2024 INCF Neuroinformatics Assembly closes TOMORROW. Don't miss your chance to participate! Register now: bit.ly/4dLheLI #NIH_SPARC @INCForg #OpenData
2
Discover how Dr. Soumya Rao, specializing in oral and craniofacial sciences and working in Dr. Tim Cox's lab, leverages the new variant search tool for scientific breakthroughs at the #KidsFirst Spring Webinar. Don't miss her insights: buff.ly/3JYlslA @NIH_CommonFund
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Are you interested in #genomics research? This @Nature article highlights how #SMaHTnetwork researchers developed an approach that links #SomaticMutations to alterations in chromatin accessibility at the single cell level. Learn more: pubmed.ncbi.nlm.nih.gov/38720070/
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It’s not too late to register for technical webinar to discuss Integrating #Clinical Research into #PrimaryCare. Join us! bit.ly/3Uw05gk
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NIH Common Fund heard what community partners had to say! Join us as we discuss a new vision for NIH’s efforts to bring #ClinicalResearch to #PrimaryCare. Register now For the June 7th public webinar: bit.ly/3R8DIwD
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📢D-14📢 Deadline approaching: @PCORI seeks to fund patient-centered CER studies focused on rare diseases! Up to $100M in available funding! Explore new PFA today and see how you can take the first step: pcori.me/3SFCmJlUp to $100M in available funding!
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On Friday 5/31 @ 1 PM ET, members of the @CfdeWorkbench will introduce new tools to query the @LINCSProgram L1000 data and gene expression signatures automatically extracted from @NCBI #GEO rummageo.com register: cfde.info
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Replying to @gioberardi1
@gioberardi1 presenting about @a2cps_pain and his secondary analysis on movement evoked pain at our annual retreat. @SutherlandPhD #painscience https://t.co/122vx4Kp3u
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#ICYMI a very nice Commentary on our new paper in @PAINthejournal by Patrick Finan @p_fi on statistical analyses of patient-reported acute and chronic pain journals.lww.com/pain/fulltext/…
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Children of all backgrounds deserve a fighting chance against Wilms Tumor. Dr. Andrew L. Hong, a 2023 #KidsFirst X01 awardee, leads a large-scale study looking for answers with a diverse patient population. Join us in our search for a cure. #WilmsTumor #CancerResearch
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Don't miss out! Join us tomorrow (5/21) at 3PM for the #Bridge2AI AI READI monthly webinar! Learn about the rapidly evolving legal and regulatory landscape of #AITechnology for #healthcare (#medicine). Join by Zoom: bit.ly/4arolWV
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Interested in #NewApproachMethodologies (NAMs)? Learn about the innovative science proposed by the #ComplementARIE Challenge prize winners that could advance the field of #NAMs: go.nih.gov/Complement-ARI…
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Only one week left to submit your application to the #NIHCommonFund’s #Oculomics #ResearchOpportunity Announcement. Contribute to the creation of new #ocular imaging technology today!: commonfund.nih.gov/venture/oculom…
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Missed this webinar, From Models to Heartbeats? No worries! You can watch it anytime on our YouTube Channel. Check it out here: youtube.com/watch?v=jo9aXw… @MedUni_Wien #NIH_SPARC #opendata #modeling
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Don't forget to register for this webinar hosted by @NatEyeInstitute featuring #Bridge2AI Investigator Dr. Lee (@aaronylee) as he talks about his work on creating an ethically sourced #AI #dataset for #Type2Diabetes (#salutogenesis). Today at 2:30PM ET: go.nih.gov/hu5Vffe
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Someone in @gly_gen "celebrates" National Bike to Work Day. #NationalBikeToWorkDay
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Check out this APS webinar on our YouTube channel. In this webinar, Maryann Martone, PhD, and Peter Hunter, PhD, explore the SCKAN knowledge base, SPARC Knowledge Graph and uses of the portal for a wider range of physiological processes. bit.ly/3TyOm1C @APSPhysiology
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Tune in 5/20 at 2:30 PM ET! #Bridge2AI Investigator Dr. Lee (@aaronylee) will share insights from his work on creating an ethically-sourced #AI #dataset for #Type2Diabetes (#salutogenesis). Register today for this webinar hosted by @NatEyeInstitute: bit.ly/3K7Pxik
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Plenty of awards for MC-IU at the HuBMAP Annual Meeting! Amazing work CNS team! @katycns @AndreasBueckle @_hubmap @IULuddy
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Unlock momentous insights with Dr. David Teachey, specializing in cancer and blood diseases, at the #KidsFirst Spring Webinar! He brings epic scientific work on Leukemia using Kids First data to the panel discussion. Register now: buff.ly/3JYlslA @NIH_CommonFund
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Unlocking the mysteries of childhood diseases by studying #ChildhoodCancer and #CongenitalDisorders together, #KidsFirstDRC and #KidsFirst researchers find common threads in the body's code. Together, we can fight for healthier futures.
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Project Pitch is now open for the 2024 SPARC FAIR Codeathon! Show off your coding skills in this 3-day virtual challenge! It's free to enter, and there's $50k up for grabs. Leverage SPARC tools and data in innovative ways. bit.ly/436EHlt #data #openscience #python #code
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New from #NIHHighRisk: scientists have found a new way to grow #kidney cells that can help learn more about important #genes and find new treatments for #KidneyDisease. Read more in the highlight: go.nih.gov/Ivt7Qfc
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Register today for a technical webinar on May 22nd at noon ET. We will be discussing the open Research Opportunity Announcement for integrating #ClinicalResearch into #PrimaryCare. Register now bit.ly/3Uw05gk
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Want to learn more about how to measure and monitor #representation in #biomedical #datasets? Then join #Bridge2AI project staff as we tune in on 5/21 at 3PM ET to learn about the @MIDRC_ #Diversity Calculator. Register: us06web.zoom.us/webinar/regist…
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Did you miss the webinar on the implementation of the simplified review framework for RPGs? The resources are now available! ▶ nexus.od.nih.gov/all/2024/05/15…
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#KidsFirst virtual office hours are now held in collaboration with @velseraofficial and the #INCLUDEDCC. Tomorrow, get your technical questions answered by our experts and learn more about leveraging these great resources: buff.ly/3qxhLwy @NIH_CommonFund
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Early bird registration for ISAN closes on Tuesday, May 27th. Don't miss out—register today! bit.ly/44IlHdP #NIH_SPARC #OpenData #ISAN2024 #OpenScience
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Join us for the #KidsFirstDRC Spring Webinar on May 29 @ 11 A.M. EDT and get an exclusive sneak peek at our new portal! Don't miss out - register now: buff.ly/3JYlslA @NIH_CommonFund
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Join #KidsFirst and @kidsfirstDRC on May 29 from 11 AM-12PM ET for a transformative look into #pediatric research at the Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures.” Live demos & insightful discussions await. Register: nih.zoomgov.com/meeting/regist… #TogetherWeRise
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Are you interested in #neurosurgery research? Check out this article by our #NIHHighRisk Research Program #NewInnovator awardee Shadi Dayeh and colleagues who developed a new tool to visualize brain activity. Learn more: pubmed.ncbi.nlm.nih.gov/38657026/
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CNS- @AndreasBueckle at the HuBMAP All Hands Meeting: VisArts Center, Rockville, MD, May 14-16, 2024 showing what CNS is creating with the with Apple Vision Pro. hubmapconsortium.org @_hubmap @IULuddy
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Don’t miss your chance to take a PUPPY (#PuppyCam) break for your #MentalHealth (@NIMHgov). Try it out in honor of #MentalHealthAwarenessMonth
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This just in: #NIHCommonFund's Acute to Chronic Pain Signatures #A2CPS has published a paper on ways researchers can standardize and analyze #pain scores to make #ChronicPain research "clinically meaningful"!
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The #NIHCommonFund is hosting a public half-day webinar on 6/7, starting at 10am ET to review results of #ListeningSessions to inform NIH’s vision for the future of #ClinicalResearch in #PrimaryCare. Want to hear what the participants said? Register today! bit.ly/3R8DIwD
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Did you miss today’s technical assistance webinar for integrating #ClinicalResearch into #PrimaryCare? It’s not too late to register to attend the Technical Assistance Webinar scheduled for May 22nd at 12pm ET. Register today! bit.ly/3Uw05gk
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Come join us for a webinar presented by Dr. Yan Li on Friday, May 17, 2024 to learn more about this useful resource "Beta Cell Hub"! bit.ly/3wwLBVr @dkNET_Info #NIH_SPARC #opendata
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This #BrainTumorAwarenessMonth, #KidsFirst is using the power of data. Our curated datasets include information on #Cancer predisposition, helping researchers identify genes linked to a higher risk of brain tumors. Earlier detection saves lives. #KidsFirstDRC #CuresStartHere
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#PrimaryCare is intended to be the setting for #prevention and everyday health care. Read about a new opportunity to explore the integration of #ClinicalResearch into everyday care: go.nih.gov/ExTIXPY
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Explore the innovative science proposed by the #ComplementARIE Challenge prize winners. Read the unconventional ideas from challenge solvers using #insilico #inchemico and #invitro approaches to #NewApproachMethodologies: go.nih.gov/Complement-ARI…
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It's been two weeks since the first ever IMPC Spring meeting that took place in South Africa. If you want to have more insight on the meeting, read our most recent news letter post! mousephenotype.org/news/beyond-th… #IMPC #BeyondtheGenome #IMPCConferences24
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Join us on 5/21 at 3PM ET for the #Bridge2AI AI READI (#Salutogenesis) monthly webinar! Learn about the rapidly evolving legal and regulatory landscape of #AITechnology for #healthcare (#medicine). Join by Zoom: bit.ly/4arolWV.
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Exciting news! ARPA-H has unveiled 2 new funding opportunities: the LIGHT program and Mission Office-specific ISOs. Learn more on our Funding Announcements page. Apply today! bit.ly/SPARCfunding @ARPA_H #opendata #funding #NIH_SPARC #OpenScience
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Exciting news! A2CPS has published online in @PAINthejournal with a statistical analysis of reports of acute and #chronicpain journals.lww.com/pain/abstract/…
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It’s not too late to register for the first technical assistance webinar to discuss Integrating #Clinical Research into #PrimaryCare. Join us tomorrow! bit.ly/3UP0wUi
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Join us on Thursday, May 16 from 1-2 PM ET for a webinar on Sharing Data in HEAL-compliant Repositories. Featuring insight from Dr. Nora Volkow of NIDA, HEAL Steward Allie Gartland-Gray, and HEAL Platform's Dr. Brienna Larrick. Live Q&A included. bit.ly/4bvm5i9 #opendata
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Join us on May 29 @ 11 A.M. ET for a transformative look into pediatric research at the #KidsFirst Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures.” Live demos and insightful discussions await. Secure your spot now: buff.ly/3JYlslA @NIH_CommonFund
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Don't forget to join @Bridge2aiVoice for this webinar on #Voice (#AI) #Biomarkers and #Validity on 5/14 at 3:30 PM ET. Log in to MS Teams: bit.ly/3WzI1Ep. ID: 21218237539. Passcode: JSTvnL. #Bridge2AI
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Only two days left to apply to the #NIHCommonFund’s SysBio Venture Initiative #ResearchOpportunity Announcement! Submit your applications now: commonfund.nih.gov/venture/sysbio
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Only two more weeks to apply to the #NIHCommonFund’s #Oculomics #ResearchOpportunity Announcement. Submit your applications today!: commonfund.nih.gov/venture/oculom…
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🔔 Have questions about PCORI’s new funding opp: Addressing Rare Diseases? Attend the Applicant Town Hall on May 14 & ask the experts. Register now: pcori.me/3OGOn02
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Did you miss the SPARC #Python Webinar? Stream it now on YouTube! Se the new SPARC Python Client and learn to navigate public datasets, download #data, and leverage the Open Simulation Platform for Advanced #Research (o²S²PARC) for data transformation. bit.ly/3UrXdRi
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Register today to join the conversation May 29th, 11AM-12PM ET! We'll be diving into #research for kids at the #KidsFirst Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures,” Live demos and insightful discussions are ahead. Register today! nih.zoomgov.com/meeting/regist…
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Join @Bridge2aiVoice for this webinar on #Voice (#AI) #Biomarkers and #Validity on 5/14 at 3:30 PM ET. Log in to MS Teams: bit.ly/3WzI1Ep. ID: 21218237539. Passcode: JSTvnL. #Bridge2AI
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Don’t forget to join us for a technical assistance webinar on integrating #ClinicalResearch into #PrimaryCare settings. It’s happening on Tuesday, May 14, at noon ET. Register today bit.ly/3UP0wUi
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Do you want to communicate with your inner cellf, but can't find the way? Then check out the new maps published in @CellCellPress by @KaiTanLab1 @ChildrensPhila, showing where different cell types reside in bone marrow, digging deep ditches to find the niches!
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📸 Got an image that inspires? We're seeking captivating captures that showcase the artistry of #spatialbiology. Submit your mesmerizing tissue images using Akoya's technology for the chance to be featured on our platforms and a $100 Amazon gift card: bit.ly/3TfdR7x
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Bringing together childhood cancer and congenital disorder registries can save lives. Hear what AACR NIH booth presenter Dr. Adam Resnick said about how collaboration transforms diagnostics and treatment: buff.ly/3QzC2fi #KidsFirstDRC
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🔬 Congratulations to Dr. William Gahl and the entire UDP team for this feature in the Washingtonian magazine! Access the article in Washingtonian's March 2024 Issue: Cool Jobs at bit.ly/3wufQME #UDN #UDP #Genetics #RareDiseases #NIH #MedicalMysteries
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Announcing the #ComplementARIE Challenge Prize winners! Read about these out-of-the box ideas that could advance the field of #NewApproachMethodologies and how they will help inform the Complement-ARIE program: go.nih.gov/Complement-ARI…
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🚀 Funding Opportunity Alert! @NIH_CommonFund seeks applications (RFA-RM-24-006) for Pilot Projects enhancing utility & usage of Common Fund data sets. Early Stage Investigators encouraged! #ResearchFunding #NIH Deadline: June 27, 2024 Details: bit.ly/3JflHbj
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A new #FundingAnnouncement looks to increase access to #ClinicalResearch by bringing it to #PrimaryCare settings. Learn more about the new opportunity: go.nih.gov/xS0qccThttps:/…
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Register for a Technical assistance webinar on 5/14/24 at 12PM ET to learn more about an NIH #FundingOpportunity to enable access to #ClinicalResearch: bit.ly/3UP0wUi
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#ICYMI Register by tomorrow, May 10th for the #Transformative Research to Address #HealthDisparities and Advance #HealthEquity (THD) Program's webinar highlighting three of their research projects!
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Why do phosphate-containing medications cause itch? MRGPRX4! Latest @RothLabUNC @Cannabatopia and Dong Lab (HHMI/Hopkins) collaboration: doi.org/10.1126/scitra…
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Rare GPR37L1 Variants Reveal Potential Association between GPR37L1 and Disorders of Anxiety and Migraine jneurosci.org/content/44/19/…
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Learn more about last week's 2024 @Bridge2aiVoice Symposium and the impact of #AI (#ML) in voice #biomarker research. #Bridge2AI
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Come join us for a webinar presented by Dr. Andrew Schroeder on Friday, May 10, 2024 to learn more about this useful resource "4DN Data Portal"! bit.ly/3UoNsTW @dkNET_Info #NIH_SPARC #opendata
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Looking for ways to learn more about biomedical data? Well how about signing up for an online course offered by CFDE with IDG scientific use cases. Starts June 3rd! Learn more at: datascience.unm.edu/isbdscourse_cf…
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🚨Data release alert! Data release 21 is live on the IMPC web portal. Phenotyping data is available for 8,707 genes with around 2.4 million new data points! For more: mousephenotype.org/news/data-rele… #mousegenetics #data #IMPC #genetics
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The UDN is hosting a virtual educational course titled “Evaluation of Undiagnosed and Rare Conditions”. This training program aims to teach methods of undiagnosed patient evaluation to students, clinicians, and researchers. Register for the course here: tinyurl.com/yckeupmh
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New study highlights bone marrow atlas from @CHOP_Research & @PennMedicine offers unprecedented window into blood production. This could lead to major advances in treating bone marrow disorders: ms.spr.ly/6016YpTRM.
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Rummagene is a search engine for gene sets, created by extracting human and mouse gene sets from supporting materials of >120,000 biomedical research publications: nature.com/articles/s4200… @AviMaayan @MaayanLab
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Always love to see new things from @AviMaayan et al. Rummaging through online papers in order to scrape the as of yet inaccessible supp tables is super smart. And such a good name (obviously). nature.com/articles/s4200…
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Want to see how spatial profiling techniques have given biologists, including @_hubmap’s own Dr. Andrea Radtke from the #GermainLab and @NIAIDNews, never before seen views of cells and tissues? Then set your sights here: optica-opn.org/home/articles/…
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Planning for #USASP2024? Be sure to catch #A2CPS investigator @torwager at a symposium, "Unlocking the Social Neuroscience of Pain: Trust, Learning, and Support" with Luana Colloca and Przemysław Bąbel on Mon at 3:30 - see you there!
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📢 dkNET #Webinar Slides Now Available! #dkNET has slides available from the webinar on March 22, 2024 "Tabula Sapiens" presented by Dr. Angela Oliveira Pisco. #cellulardiversity #genome #humanatlas #transcriptome #geneexpression Slide link: slideshare.net/slideshow/dkne…
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Thank you, @AACR, for another terrific annual meeting. We enjoyed sharing our research, learning from others, and connecting with the community of people working to advance #CancerResearch. We look forward to seeing you again next year! #AACR24 #NCIFuture
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The NIH Common Fund is requesting research applications encouraging the use of Common Fund data. To be eligible, the proposed research must substantially leverage data from at least two Common Fund programs. grants.nih.gov/grants/guide/r…
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Out of the kidney-ness of our hearts, here is a lightsheet image from @_hubmap researcher Liam McLaughlin in Sanjay Jain's lab @WUSTL of a kidney's structure. This image shows arteries & other vessels bringing blood to the nerves & glomeruli throughout. It’s un-bean-lievable!
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Did you miss the #KidsFirst Pediatric Data Hour at #AARC24? It’s not too late to visit booth #3759 for a demo of the #Data Portal with the @kidsfirstDRC.
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Have you registered for our #webinar on “Unlocking the Power of FAIR Data Sharing With ImmPort”? Check out the #dkNET blog below for info: dknet.org/about/blog/2729 #datasharing #FAIRdata #immunology #datamanagement
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CBTN posters represented at #AACR2024 in San Diego! Dr. Ali Nabavizadeh of @ChildrensPhila, along with the translational imaging research team, utilize imaging and advanced bioinformatics methods to gain insights about pediatric #LGG biology to improve outcomes. #wearecbtn
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Have you registered for next week's webinar on how the new simplified review framework will impact funding opportunities? 💭 Join NIH experts for live Q&A: go.nih.gov/S4hfVUq #NIHgrantsevents
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