Discover, Analyze, and Integrate NIH Common Fund Data
The NIH Common Fund programs generate diverse datasets from a variety of projects ranging from genomics to phenotypes. The Common Fund Data Ecosystem (CFDE) aims to facilitate improved discovery, reuse, integration, and analyses of these datasets to form novel hypothesis for accelerating discoveries in biomedical research.
The Common Fund Data Ecosystem (CFDE) aims to enable broad use of data generated by Common Fund Programs to accelerate hypothesis generation and discovery.
TRAINING & OUTREACH
The 2024 HuBMAP Fall Hackathon
The 2024 HuBMAP Fall Hackathon will be held virtually with a focus on the HuBMAP Data Portal Workspaces. Workspaces are a new feature on the HuBMAP Data Portal that enable lightweight exploration of public HuBMAP data and user-provided data using Python and R in a Jupyter Lab environment hosted by HuBMAP at no cost.
Starts: September 20, 2024
Making data more FAIR
The Data Resource and Knowledge Centers are dedicated to enhancing the accessibility and utility of Common Fund-generated data and resources, striving to uphold the FAIR principles. This commitment serves as a catalyst for groundbreaking biomedical discoveries, fostering synergies across the diverse datasets within the Common Fund ecosystem, thereby unlocking novel avenues of research and innovation.
Findable
Accessible
Interoperable
Reusable
Social Media
Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.
📷 New on @gly_gen! We've partnered with @GornikLab to bring you a plasma N-glycome ML-ready dataset for Type II diabetes risk assessment. Perfect for advancing your predictive modeling research. Check it out today at data.glygen.org! #MachineLearning #DiabetesResearch
Replying to @gly_gen
@gly_gen & collaborators shared on their curation workshop held in Padua, Italy. Discover how bioinformatics resources are advancing the collection and annotation of glycan function-related data. Thx @biocurator @SFGlycobiology
pubmed.ncbi.nlm.nih.gov/39137905/ 
Join us for the African Microbiome Day 3.0 virtual event scheduled for 16th September, 2024 from 2:00pm - 6:00pm CAT. Register here: h3africa.org/index.php/afri… 
The #NIH_SPARC Portal has updated: enhanced citation guidance, new "template_schema_version" in dataset metadata, clickable tool images, improved search prompts, relocated navigation links, map annotation, updated AWS cost, and a "Funding Program" facet. bit.ly/3tNVXi7 
Check out the most recent UDN publication!
⭐️ Key takeaway: This study links #RAB11A missense variants to intellectual disability, developmental delays, multisystemic features, and epilepsy from variants outside binding sites.
pubmed.ncbi.nlm.nih.gov/39181022/
Explore the new #KidsFirstDRC Publications page! Discover more than 160 articles that share how researchers use our data to advance cancer, congenital disorders, and more studies. Filter by condition and stay updated on the latest findings. Check it out: buff.ly/3XuQNnd 
Upcoming Webinar for #OpenScience Week: Join #NIH_SPARC members Sue Tappan & Ben Dichter on 9/16 for a webinar on the power of #OpenScience. Learn what it means, why data sharing matters, & how it drives innovation. Register: tab.so/OpenScience @AmericanBrainCo @NeurodataWB 
Science is better when we share! SPARC is building a vibrant ecosystem where neuroscience data and tools are not only open and FAIR for all but also citable. sparc.science #OpenScience #OpenData #FAIRdata #NIH_SPARC 
📢 Attention 📢
Two UDN posters will be presented at the 2024 NSGC Annual Conference in New Orleans, LA, from September 17-21. Congratulations to Kelly and Beatriz! 
Are you a #biomedical researcher in #NewApproachMethodologies? The NIH Common Fund #Complement_ARIE program published a landscape analysis that highlights challenges and opportunities in the field of #NAMs. Learn more: go.nih.gov/complement-ari… 
Check out the most recent UDN publication!
⭐️ Key takeaway: This study links #DENND5A variants to DEE by demonstrating disrupted neural progenitor cell division, offering insights into the condition’s mechanism and variant-specific clinical guidance.
pubmed.ncbi.nlm.nih.gov/39174524/#full…
The SenNet Annual Meeting continues with day 2! Incredible discussions, poster awards, and some wonderful weather in La Jolla, CA. 
Are you a #biomedical researcher studying #NewApproachMethodologies? The NIH #Complement_ARIE program wants to hear from you! Explore the Notice of Intent to Publish a #FundingOpportunity to help build technology development centers for #NAMs go.nih.gov/iiuNC9v 
Abstract Submission is Open!!!!!!
The 15th African Society of Human Genetics Conference and the 1st Ugandan Society of Human Genetics and Bioinformatics.
Theme: Harnessing Data Science and Artificial Intelligence for African Genomics
Website: afshg2025.org 
The SenNet Annual Meeting has kicked off in La Jolla, CA! Welcoming our #senescence researchers from across the country to this informative & collaborative conference. 
During #SuicidePreventionMonth, help @NIMHgov raise awareness about suicide prevention by sharing informational materials based on the latest research. Everyone can help save lives. Share science. Share hope. go.nih.gov/rlM9wFy #SPM24 #shareNIMH #suicideprevention 
Join #NIH_CFDE on 9/27 at 1PM ET. Learn about tools and methods for discovering disease-causing gene regulatory variants (#genomics) from WGS #data (#bioinformatics) as it relates to congenital heart disease (#CHD), #ExRNA. Learn more: bit.ly/3vX6iJK 
Do you have ideas about integrating #AI with #MedicalImaging in #PrecisionMedicine? We want to hear from you! Submit your ideas about scientific opportunities and research challenges in by 9/23 go.nih.gov/0c7NxW4 
Check out the most recent UDN publication!
⭐️Key takeaway: A research reanalysis identified a homozygous #DPH1 variant, diagnosing DEDSSH1 in a sibling pair initially labeled with Fine-Lubinsky syndrome, underscoring #DPH1 screening and RNAseq validation.
pubmed.ncbi.nlm.nih.gov/39166428/
September is #ChildhoodCancerAwarenessMonth. #KidsFirstDRC is home to the largest pediatric brain tumor genomic dataset (shoutout to @wearecbtn), fueling research to give children the brighter futures they deserve. Let’s honor their courage and push for cures. 💛
#CCAM 
#KidsFirst will be making waves at the Children’s Brain Tumor Network Summit October 9-11. Join us as we expand collaboration to accelerate #research to cure #KidsCancer. Register now: buff.ly/4eGEZF0 
Want to learn more about Trustworthy #MachineLearning? Tune in on 9/17 at 3PM ET to the #Bridge2AI discussion forum to learn more about how to develop accurate #ArtificialIntelligence (#AI/#ML) models that are #inclusive, fair and transparent. Register at bit.ly/4c3Dxdr 
Calling all #NewApproachMethodologies researchers! The NIH Common Fund #Complement_ARIE program will develop centers to catalyze development of #novel combinatorial #NAMs. Explore the Notice of Intent to Publish a #FundingOpportunity now: go.nih.gov/iiuNC9v 
Check out the most recent UDN publication!
⭐️ Key takeaway: The novel p.H119Y variant in #MAP2K1 expands the phenotypic spectrum of #MAP2K1-related RASopathies, revealing atypical features not previously linked to cardio-facio-cutaneous syndrome.
pubmed.ncbi.nlm.nih.gov/39166407/
What is the origin of migraine headache pain? That's the first sentence of our latest news article covering recent research identifying a role for the glymphatic system in #migraine with aura. Read more on MSC.
l8r.it/wRTh
Join us for Dr. Michael Tiemeyer’s webinar on fundamentals of glycobiology and glycoinformatics on Sept 19, 2024 at 12PM ET, hosted by @FAESatNIH. Explore bioinformatics tools & GlyGen to analyze genes, proteins & glycans.
To Register: education.faes.org/search/publicC… 
Mitchell Herndon’s battle with an undiagnosed disease led to the discovery of 'Mitchell Syndrome,' a condition he faced with courage until he passed. Mitchell's journey inspired his mother, Michele, to support other individuals with Mitchell Syndrome.
bit.ly/4dJpuvd
ICYMI, check out this @physorg_com article about CytoCommunity, developed by @KaiTanLab1 @CHOP_Research
msn.com/en-in/health/o…
Read the original article in @naturemethods
Love this egg-squisite CODEX image of an ovary made by #HuBMAP @_hubmap researchers Elizabeth Tsui, Hannah McDowell (Laronda lab @NUFeinbergMed), Alex Cabrera & Jean Rosario (O’Neill lab @PennMedicine)! It will send you ovary the rainbow! #WomenInScience #PCOSAwarenessMonth2024 
Have ideas about using #MedicalImaging and other clinical data with #AI algorithms to support #PrecisionMedicine? The #NIHCommonFund wants to hear them! Submit your innovative ideas in by 9/23 go.nih.gov/0c7NxW4 
Only 1 more month to submit an abstract for the #4DNucleome Nuclear Architecture Meeting! It will be held Dec 11-13, 2024, in San Diego, CA. Be sure to submit your abstract before the Oct 4 deadline: bit.ly/3X9gha0. Trainees, students, and #postdocs encouraged to apply 
😎 Check it out! Dr. Alexandra Naba (@NabaLabUIC) discusses novel insights into the compositional diversity of matrisome components. @NatRevMCB
Give it a read: go.nature.com/4dTQd8E 
There's still time! Register now for free for #A2CPS Journal Club this Thurs Sep 5 with Gwen Sowa, MD, PhD, @PittTweet on Phenotyping Low Back Pain at 9PT/ noon ET surveymonkey.com/r/A2CPSJournal… 
We’re sharing new content on pain each week in September for #PainAwarenessMonth. Follow @NIH_NCCIH to be sure you don’t miss anything! #NIHPainProgress
Tune into this week’s Acute to #ChronicPain Signatures Program (#A2CPS) Journal Club with Dr. Gwen Sowa on phenotyping low back pain this Thursday, Sep 5 at 9 PT/Noon ET! Register today!
We are gathering input on the current state and potential of #AI enabled #PrecisionMedicine that integrates #MedicalImaging with other data types. Submit your innovative ideas by 9/23 go.nih.gov/0c7NxW4 
René Ranzinger, @universityofga, member of the #MIRAGE commission, presents the MIRAGE guidelines for glycan microarray and mass spectrometry data at the @GLYCOTwinning Summer School 2024, @FCTNOVA, Caparica, Portugal 🇵🇹:
🔗glycotwinning.eu/summerschool24
#GlycoMIRAGE #glycotime 
Now Online Mechanisms of assembly and remodelling of the extracellular matrix dlvr.it/TCjr0l 
LAST CALL, deadline 9/1!
Register for AAEV by September 1st to receive early bird pricing - prices to increase after 9/1 deadline!
*Abstract submissions ALSO DUE by 9/1
View the AAEV site to see registration and abstract details, aaev.org/houston2024 
Exciting News! GlyGen is now on LinkedIn! Connect with us for the latest updates in glycobiology, bioinformatics, and more. Let’s advance glycoscience together! #Glycobiology #Bioinformatics #ScienceCommunity #glycotime
linkedin.com/company/glygen…
Don't forget to tune in tomorrow (8/30) at 1PM ET for the upcoming webinar on an introduction to Acute to #ChronicPain Signatures #A2CPS @a2cps_pain. Learn more: bit.ly/3vX6iJK
The @gly_gen team is excited to be part of the NIH & FDA Glycoscience Research Day! Visit us at the GlyGen Booth on the upper level of Natcher Auditorium at the NIH campus, and also explore our research posters. See you there! #Glycoscience #NIH #FDA #glycotime 
We're excited to announce that the internal Fall KOMP-IMPC Meeting,where we discuss our ongoing work, progress and future prospects, will be hosted by the @CZphenogenomics in Prague, Czech Republic, from 15th-16th September, 2024!
More: mousephenotype.org/news/impc-komp…
#IMPC #Genetics
We are TWO days away from our latest #CFDEPublicWebinarSeries featuring Acute to Chronic Pain Signatures @a2cps_pain! Learn more about the event here 👇 @CfdeWorkbench
We are only TWO WEEKS away from the start of the Spatial Biology Summit! It's not too late to register! We are still accepting poster abstracts until the end of this week. More info here: angelolab.com/spatial-biolog…
@MikeAngeloLab @Bendall_Lab 
The NIH Common Fund #Complement_ARIE program needs your help to build comprehensive technology development centers for novel #NewApproachMethodologies! Explore the Notice of Intent to Publish a #FundingOpportunity: go.nih.gov/iiuNC9v 
The #NIH_SPARC Data and Resource Center September Office Hours for K-core #curation, MAP-core, SIM-core and DAT-core can be found here: bit.ly/DRCOfficeHours We love questions! We have answers. #computationalmodeling #data https://t.co/TlcErxFuDm
Join #NIH_CFDE on 8/30 at 1PM ET for an introduction webinar for Acute to #ChronicPain Signatures (@a2cps_pain). #A2CPS is an initiative to identify #biomarkers in pain science. Learn more: bit.ly/3vX6iJK 
Have ideas about using #MedicalImaging and other clinical data with #AI #algorithms to support #PrecisionMedicine? We want to hear them! Submit your innovative ideas in by 9/23 go.nih.gov/0c7NxW4 
Turns out that this was another great opportunity to use the @10xGenomics #Visium platform to understand the transcriptome of Nageotte nodules. We profiled 100s of these nodules and the data will be available soon on @sparc_science
🥁 Join us for the next #GlyGenWebinar on Sept 17, 2024, at 10 AM ET! Dr. Olga Gornik @GornikLab from the University of Zagreb will dive into N-glycosylation in diabetes, exploring glycan structures as potential diagnostic markers. 🔬
More info - tinyurl.com/GlyGen-Webinar 
Check out the most recent UDN publication!
A patient with #UQCRFS1-related mitochondrial complex III deficiency and #GJA8-related cataracts was identified. The #UQCRFS1 variant caused complex III dysfunction, confirming its pathogenic role.
sciencedirect.com/science/articl…
Thrilled to share that SPARC.RL won a grand prize 🏆 in the @sparc_science codeathon 2024! Big thanks to my teammate @BentleyJohnT for his amazing collaboration. We’re making RL more accessible in biomedical engineering. Check out our project: github.com/SPARC-FAIR-Cod…
Celebrate all the #creative projects from the 2024 SPARC FAIR #Codeathon! Visit the SPARC.science YouTube channel to see the winners and their innovative solutions! #NIH_SPARC #OpenData #code4life #FAIRdata youtu.be/kd0UoDWX0wM?fe… https://t.co/dZEuRX1NzW
Registration now open for CFDE Virtual Workshop “Biomarker discovery from extracellular (cell-free) RNA-seq and tissue of origin from GTEx RNA-seq profiles”
Sept 12th 2024, 1-3 pm ET
More info and registration: exrna.org/events/cfdewor…
@CfdeNih @GTExPortal 
How much #Data is at your fingertips? The Kids First Data Resource Portal holds over 188,000 data files, making it one of the most extensive pediatric data resources! Connected with CAVATICA for seamless cloud-based analysis and sharing. Explore more: buff.ly/4dqsYmi 
📢Calling all past/present awardees and potential applicants! Mark your 🗓️ and join us for our annual chat. This is a great opportunity to engage with awardees and hear more about the programs bit.ly/LRPXChat2024 💻#LRPchat #NIHLRP #AcademicChatter 
Check out the most recent UDN publication!
Key takeaway: Bi-allelic RFC4 variants disrupt RFC complex formation, impair DNA replication, and are linked to a multisystemic disorder, highlighting the role of RFC4 in genomic integrity and disease.
pubmed.ncbi.nlm.nih.gov/39106866/#full…
Learn how our @somaticediting researchers & their colleagues engineered an adeno-associated virus (#AAV) that safely crosses the #BloodBrainBarrier, which can help prevent, treat, and cure brain disorders caused by genetic changes. @NIMHgov nimh.nih.gov/news/science-n…
Replying to @suzanne_ponik
@suzanne_ponik Big kuddos to the entire @_hubmap HRA and OMAP teams for doing the heavy-lifting!
Are you interested in improving the utility and accessibility of spatial omics and #SingleCell data for #CancerResearch? We encourage you to submit an application to participate in the #HTAN Data Jamboree by Sept. 6. humantumoratlas.org/jamboree 
📢EXCITING News! 🧩✨Contest Time! Can you guess the organ? Last 3D Organ of the contest!🧠👀Make sure to drop your guess in the comments and retweet! 📝All correct answers enter a prize raffle! 🏆#HRA #GuessTheOrgan @_hubmap @NIH @sennetresearch 
Attending the #HealthITSummit24? Join Dr. Chris Kinsinger, #NIHCommonFund, on 9/19 for a panel discussion on #AI Adoption in the Health Care Ecosystem. #ArtificialIntelligence #Bridge2AI
Check out this year's winners of the #NIH_SPARC codeathon, who made new #FAIRdata visualization platforms, analysis pipelines, and #AI tools to enhance use of SPARC #neuromodulation data. Learn more about the projects: bit.ly/3AEai3K 
Researchers used MRI and deep learning to create a 3D virtual stomach model showing how it moves during digestion. This could enhance how we diagnose & treat gastrointestinal problems. bit.ly/4fflAvk #NIH_SPARC #OpenData @UMich @AucklandUni @FloreyInstitute @sheffielduni 
Unfortunately, the #Bridge2AI webinar scheduled for today (8/20) at 3PM ET on the #ethics of voice #AI (#ArtificialIntelligence) is canceled. We hope you will join us next month.
🥈 Runners up of SPARC-FAIR global codeathon organized by NIH and SPARC Data and Resource Center.
Thank you @sparc_science for the amazing experience and opportunity.
#bioengineering #biotech #biotechnology 
Interested in using single-cell and spatial omics methods in your #CancerResearch? Do you have creative approaches for analyzing and integrating these data? Check out the @NCIHTAN Data Jamboree, held in-person Nov 6-8 2024 in Bethesda, MD!
Apply by Sept 6: humantumoratlas.org/jamboree 
It's the moment we've all been waiting for! The 2024 SPARC FAIR hashtag #Codeathon winners announcement is today. Get to know the teams on our YouTube channel. Watch each team's presentation and celebrate their amazing projects! bit.ly/3AEai3K #NIH_SPARC #OpenData #FAIR 
We issued a request to gather input about scientific opportunities and research challenges in enabling #PrecisionMedicine with #AI by integrating #MedicalImaging with other data types! Submit your innovative ideas by 9/23 go.nih.gov/0c7NxW4 
Check out the most recent UDN publication!
Key takeaway: Genome-wide DNA methylation analysis identified candidate variants in 2% of unsolved DEE cases, including rare DMRs, episignatures, and pathogenic #CHD2 variants.
pubmed.ncbi.nlm.nih.gov/39107278/
Celebrate all the great projects from the 2024 SPARC FAIR #Codeathon! Join us today and congratulate the winners! 4:00 PM EDT. RSVP here: forms.gle/bMedNTtj4vKf7k… #NIH_SPARC #OpenData 
Coming Soon!!!! Put it on your calendars now! October 5th, 9am -3pm sciencefest.indiana.edu #mappingscience 
Discover the power of the #KidsFirstDRC Portal's new visualization capabilities that let you interactively explore datasets. Uncover critical insights into pediatric conditions and see the most impactful genetic variants at a glance. Explore now: buff.ly/4cu9hbX
#Research 
Coming up: #A2CPS Journal Club with Dr. Gwen Sowa MD PhD @PittTweet on Phenotyping Low Back Pain Thurs Sep 5 at 9 PT/noon ET FREE! Register today: surveymonkey.com/r/A2CPSJournal… 
Frontiers in Digital Health is delighted to partner with Bridge2AI-Voice, funded by the NIH Common Fund, to explore voice as a health biomarker. They generate diverse, ethical voice datasets and build networks via symposiums and education.
@Bridge2aiVoice
b2ai-voice.org 
Registration open for this meeting for a bit longer. A few spots left sbpdiscovery.org/calendar/molec… Submit an Abstract and present a Short Talk or Poster. This is a small meeting, so a great networking opportunity w/ great speakers. Please circulate. 
Join our Virtual Symposium in Big #DataScience on 8/8 @ 10 AM ET where the @MaayanLab trainees in the 2024 Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mountsinai.zoom.us/webinar/regist… 
Check out the most recent UDN publication!
Key takeaway: A sibling pair had compound heterozygous VUS in the #TTNgene. Further reanalysis of RNAseq data with a different approach led to the diagnosis of congenital titinopathy.
pubmed.ncbi.nlm.nih.gov/38924341/
The 2024 SPARC FAIR Codeathon is next month. Check out the winners of last year’s Codeathon here: bit.ly/4cCZ0ee Apply to join a team by July 27th to participate this year. #OpenScience #NIH_SPARC #codeathon 
🧪 The deadline is tomorrow to respond to the Notice of Special Interest (NOSI) on advancing data science approaches for COVID-19 testing technologies!
Explore existing data in RADx DataHub by July 16th, 2024. #COVID19 #DataScience
Respond here: bit.ly/4a4oFf3 
Have you heard the news? The #NIHCommonFund issued a request to gather input about scientific opportunities and research challenges that may shape future activities! Submit your #innovative ideas in #Biomedical or #BehavioralResearch here: youtube.com/watch?v=SAi24Z… 
Social Media
Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.
📷 New on @gly_gen! We've partnered with @GornikLab to bring you a plasma N-glycome ML-ready dataset for Type II diabetes risk assessment. Perfect for advancing your predictive modeling research. Check it out today at data.glygen.org! #MachineLearning #DiabetesResearch
Replying to @gly_gen
@gly_gen & collaborators shared on their curation workshop held in Padua, Italy. Discover how bioinformatics resources are advancing the collection and annotation of glycan function-related data. Thx @biocurator @SFGlycobiology
pubmed.ncbi.nlm.nih.gov/39137905/
Join us for the African Microbiome Day 3.0 virtual event scheduled for 16th September, 2024 from 2:00pm - 6:00pm CAT. Register here: h3africa.org/index.php/afri…
The #NIH_SPARC Portal has updated: enhanced citation guidance, new "template_schema_version" in dataset metadata, clickable tool images, improved search prompts, relocated navigation links, map annotation, updated AWS cost, and a "Funding Program" facet. bit.ly/3tNVXi7
Check out the most recent UDN publication!
⭐️ Key takeaway: This study links #RAB11A missense variants to intellectual disability, developmental delays, multisystemic features, and epilepsy from variants outside binding sites.
pubmed.ncbi.nlm.nih.gov/39181022/
Explore the new #KidsFirstDRC Publications page! Discover more than 160 articles that share how researchers use our data to advance cancer, congenital disorders, and more studies. Filter by condition and stay updated on the latest findings. Check it out: buff.ly/3XuQNnd
Upcoming Webinar for #OpenScience Week: Join #NIH_SPARC members Sue Tappan & Ben Dichter on 9/16 for a webinar on the power of #OpenScience. Learn what it means, why data sharing matters, & how it drives innovation. Register: tab.so/OpenScience @AmericanBrainCo @NeurodataWB
Science is better when we share! SPARC is building a vibrant ecosystem where neuroscience data and tools are not only open and FAIR for all but also citable. sparc.science #OpenScience #OpenData #FAIRdata #NIH_SPARC
📢 Attention 📢
Two UDN posters will be presented at the 2024 NSGC Annual Conference in New Orleans, LA, from September 17-21. Congratulations to Kelly and Beatriz!
Are you a #biomedical researcher in #NewApproachMethodologies? The NIH Common Fund #Complement_ARIE program published a landscape analysis that highlights challenges and opportunities in the field of #NAMs. Learn more: go.nih.gov/complement-ari…
Check out the most recent UDN publication!
⭐️ Key takeaway: This study links #DENND5A variants to DEE by demonstrating disrupted neural progenitor cell division, offering insights into the condition’s mechanism and variant-specific clinical guidance.
pubmed.ncbi.nlm.nih.gov/39174524/#full…
The SenNet Annual Meeting continues with day 2! Incredible discussions, poster awards, and some wonderful weather in La Jolla, CA.
Are you a #biomedical researcher studying #NewApproachMethodologies? The NIH #Complement_ARIE program wants to hear from you! Explore the Notice of Intent to Publish a #FundingOpportunity to help build technology development centers for #NAMs go.nih.gov/iiuNC9v
Abstract Submission is Open!!!!!!
The 15th African Society of Human Genetics Conference and the 1st Ugandan Society of Human Genetics and Bioinformatics.
Theme: Harnessing Data Science and Artificial Intelligence for African Genomics
Website: afshg2025.org
The SenNet Annual Meeting has kicked off in La Jolla, CA! Welcoming our #senescence researchers from across the country to this informative & collaborative conference.
During #SuicidePreventionMonth, help @NIMHgov raise awareness about suicide prevention by sharing informational materials based on the latest research. Everyone can help save lives. Share science. Share hope. go.nih.gov/rlM9wFy #SPM24 #shareNIMH #suicideprevention
Join #NIH_CFDE on 9/27 at 1PM ET. Learn about tools and methods for discovering disease-causing gene regulatory variants (#genomics) from WGS #data (#bioinformatics) as it relates to congenital heart disease (#CHD), #ExRNA. Learn more: bit.ly/3vX6iJK
Do you have ideas about integrating #AI with #MedicalImaging in #PrecisionMedicine? We want to hear from you! Submit your ideas about scientific opportunities and research challenges in by 9/23 go.nih.gov/0c7NxW4
Check out the most recent UDN publication!
⭐️Key takeaway: A research reanalysis identified a homozygous #DPH1 variant, diagnosing DEDSSH1 in a sibling pair initially labeled with Fine-Lubinsky syndrome, underscoring #DPH1 screening and RNAseq validation.
pubmed.ncbi.nlm.nih.gov/39166428/
September is #ChildhoodCancerAwarenessMonth. #KidsFirstDRC is home to the largest pediatric brain tumor genomic dataset (shoutout to @wearecbtn), fueling research to give children the brighter futures they deserve. Let’s honor their courage and push for cures. 💛
#CCAM
#KidsFirst will be making waves at the Children’s Brain Tumor Network Summit October 9-11. Join us as we expand collaboration to accelerate #research to cure #KidsCancer. Register now: buff.ly/4eGEZF0
Want to learn more about Trustworthy #MachineLearning? Tune in on 9/17 at 3PM ET to the #Bridge2AI discussion forum to learn more about how to develop accurate #ArtificialIntelligence (#AI/#ML) models that are #inclusive, fair and transparent. Register at bit.ly/4c3Dxdr
Calling all #NewApproachMethodologies researchers! The NIH Common Fund #Complement_ARIE program will develop centers to catalyze development of #novel combinatorial #NAMs. Explore the Notice of Intent to Publish a #FundingOpportunity now: go.nih.gov/iiuNC9v
Check out the most recent UDN publication!
⭐️ Key takeaway: The novel p.H119Y variant in #MAP2K1 expands the phenotypic spectrum of #MAP2K1-related RASopathies, revealing atypical features not previously linked to cardio-facio-cutaneous syndrome.
pubmed.ncbi.nlm.nih.gov/39166407/
What is the origin of migraine headache pain? That's the first sentence of our latest news article covering recent research identifying a role for the glymphatic system in #migraine with aura. Read more on MSC.
l8r.it/wRTh
Join us for Dr. Michael Tiemeyer’s webinar on fundamentals of glycobiology and glycoinformatics on Sept 19, 2024 at 12PM ET, hosted by @FAESatNIH. Explore bioinformatics tools & GlyGen to analyze genes, proteins & glycans.
To Register: education.faes.org/search/publicC…
Mitchell Herndon’s battle with an undiagnosed disease led to the discovery of 'Mitchell Syndrome,' a condition he faced with courage until he passed. Mitchell's journey inspired his mother, Michele, to support other individuals with Mitchell Syndrome.
bit.ly/4dJpuvd
ICYMI, check out this @physorg_com article about CytoCommunity, developed by @KaiTanLab1 @CHOP_Research
msn.com/en-in/health/o…
Read the original article in @naturemethods
Love this egg-squisite CODEX image of an ovary made by #HuBMAP @_hubmap researchers Elizabeth Tsui, Hannah McDowell (Laronda lab @NUFeinbergMed), Alex Cabrera & Jean Rosario (O’Neill lab @PennMedicine)! It will send you ovary the rainbow! #WomenInScience #PCOSAwarenessMonth2024
Have ideas about using #MedicalImaging and other clinical data with #AI algorithms to support #PrecisionMedicine? The #NIHCommonFund wants to hear them! Submit your innovative ideas in by 9/23 go.nih.gov/0c7NxW4
Only 1 more month to submit an abstract for the #4DNucleome Nuclear Architecture Meeting! It will be held Dec 11-13, 2024, in San Diego, CA. Be sure to submit your abstract before the Oct 4 deadline: bit.ly/3X9gha0. Trainees, students, and #postdocs encouraged to apply
😎 Check it out! Dr. Alexandra Naba (@NabaLabUIC) discusses novel insights into the compositional diversity of matrisome components. @NatRevMCB
Give it a read: go.nature.com/4dTQd8E
There's still time! Register now for free for #A2CPS Journal Club this Thurs Sep 5 with Gwen Sowa, MD, PhD, @PittTweet on Phenotyping Low Back Pain at 9PT/ noon ET surveymonkey.com/r/A2CPSJournal…
We’re sharing new content on pain each week in September for #PainAwarenessMonth. Follow @NIH_NCCIH to be sure you don’t miss anything! #NIHPainProgress
Tune into this week’s Acute to #ChronicPain Signatures Program (#A2CPS) Journal Club with Dr. Gwen Sowa on phenotyping low back pain this Thursday, Sep 5 at 9 PT/Noon ET! Register today!
We are gathering input on the current state and potential of #AI enabled #PrecisionMedicine that integrates #MedicalImaging with other data types. Submit your innovative ideas by 9/23 go.nih.gov/0c7NxW4
René Ranzinger, @universityofga, member of the #MIRAGE commission, presents the MIRAGE guidelines for glycan microarray and mass spectrometry data at the @GLYCOTwinning Summer School 2024, @FCTNOVA, Caparica, Portugal 🇵🇹:
🔗glycotwinning.eu/summerschool24
#GlycoMIRAGE #glycotime
Now Online Mechanisms of assembly and remodelling of the extracellular matrix dlvr.it/TCjr0l
LAST CALL, deadline 9/1!
Register for AAEV by September 1st to receive early bird pricing - prices to increase after 9/1 deadline!
*Abstract submissions ALSO DUE by 9/1
View the AAEV site to see registration and abstract details, aaev.org/houston2024
Exciting News! GlyGen is now on LinkedIn! Connect with us for the latest updates in glycobiology, bioinformatics, and more. Let’s advance glycoscience together! #Glycobiology #Bioinformatics #ScienceCommunity #glycotime
linkedin.com/company/glygen…
Don't forget to tune in tomorrow (8/30) at 1PM ET for the upcoming webinar on an introduction to Acute to #ChronicPain Signatures #A2CPS @a2cps_pain. Learn more: bit.ly/3vX6iJK
The @gly_gen team is excited to be part of the NIH & FDA Glycoscience Research Day! Visit us at the GlyGen Booth on the upper level of Natcher Auditorium at the NIH campus, and also explore our research posters. See you there! #Glycoscience #NIH #FDA #glycotime
We're excited to announce that the internal Fall KOMP-IMPC Meeting,where we discuss our ongoing work, progress and future prospects, will be hosted by the @CZphenogenomics in Prague, Czech Republic, from 15th-16th September, 2024!
More: mousephenotype.org/news/impc-komp…
#IMPC #Genetics
We are TWO days away from our latest #CFDEPublicWebinarSeries featuring Acute to Chronic Pain Signatures @a2cps_pain! Learn more about the event here 👇 @CfdeWorkbench
We are only TWO WEEKS away from the start of the Spatial Biology Summit! It's not too late to register! We are still accepting poster abstracts until the end of this week. More info here: angelolab.com/spatial-biolog…
@MikeAngeloLab @Bendall_Lab
The NIH Common Fund #Complement_ARIE program needs your help to build comprehensive technology development centers for novel #NewApproachMethodologies! Explore the Notice of Intent to Publish a #FundingOpportunity: go.nih.gov/iiuNC9v
The #NIH_SPARC Data and Resource Center September Office Hours for K-core #curation, MAP-core, SIM-core and DAT-core can be found here: bit.ly/DRCOfficeHours We love questions! We have answers. #computationalmodeling #data https://t.co/TlcErxFuDm
Join #NIH_CFDE on 8/30 at 1PM ET for an introduction webinar for Acute to #ChronicPain Signatures (@a2cps_pain). #A2CPS is an initiative to identify #biomarkers in pain science. Learn more: bit.ly/3vX6iJK
Have ideas about using #MedicalImaging and other clinical data with #AI #algorithms to support #PrecisionMedicine? We want to hear them! Submit your innovative ideas in by 9/23 go.nih.gov/0c7NxW4
Turns out that this was another great opportunity to use the @10xGenomics #Visium platform to understand the transcriptome of Nageotte nodules. We profiled 100s of these nodules and the data will be available soon on @sparc_science
🥁 Join us for the next #GlyGenWebinar on Sept 17, 2024, at 10 AM ET! Dr. Olga Gornik @GornikLab from the University of Zagreb will dive into N-glycosylation in diabetes, exploring glycan structures as potential diagnostic markers. 🔬
More info - tinyurl.com/GlyGen-Webinar
Check out the most recent UDN publication!
A patient with #UQCRFS1-related mitochondrial complex III deficiency and #GJA8-related cataracts was identified. The #UQCRFS1 variant caused complex III dysfunction, confirming its pathogenic role.
sciencedirect.com/science/articl…
Thrilled to share that SPARC.RL won a grand prize 🏆 in the @sparc_science codeathon 2024! Big thanks to my teammate @BentleyJohnT for his amazing collaboration. We’re making RL more accessible in biomedical engineering. Check out our project: github.com/SPARC-FAIR-Cod…
Celebrate all the #creative projects from the 2024 SPARC FAIR #Codeathon! Visit the SPARC.science YouTube channel to see the winners and their innovative solutions! #NIH_SPARC #OpenData #code4life #FAIRdata youtu.be/kd0UoDWX0wM?fe… https://t.co/dZEuRX1NzW
Registration now open for CFDE Virtual Workshop “Biomarker discovery from extracellular (cell-free) RNA-seq and tissue of origin from GTEx RNA-seq profiles”
Sept 12th 2024, 1-3 pm ET
More info and registration: exrna.org/events/cfdewor…
@CfdeNih @GTExPortal
How much #Data is at your fingertips? The Kids First Data Resource Portal holds over 188,000 data files, making it one of the most extensive pediatric data resources! Connected with CAVATICA for seamless cloud-based analysis and sharing. Explore more: buff.ly/4dqsYmi
📢Calling all past/present awardees and potential applicants! Mark your 🗓️ and join us for our annual chat. This is a great opportunity to engage with awardees and hear more about the programs bit.ly/LRPXChat2024 💻#LRPchat #NIHLRP #AcademicChatter
Check out the most recent UDN publication!
Key takeaway: Bi-allelic RFC4 variants disrupt RFC complex formation, impair DNA replication, and are linked to a multisystemic disorder, highlighting the role of RFC4 in genomic integrity and disease.
pubmed.ncbi.nlm.nih.gov/39106866/#full…
Learn how our @somaticediting researchers & their colleagues engineered an adeno-associated virus (#AAV) that safely crosses the #BloodBrainBarrier, which can help prevent, treat, and cure brain disorders caused by genetic changes. @NIMHgov nimh.nih.gov/news/science-n…
Replying to @suzanne_ponik
@suzanne_ponik Big kuddos to the entire @_hubmap HRA and OMAP teams for doing the heavy-lifting!
Are you interested in improving the utility and accessibility of spatial omics and #SingleCell data for #CancerResearch? We encourage you to submit an application to participate in the #HTAN Data Jamboree by Sept. 6. humantumoratlas.org/jamboree
📢EXCITING News! 🧩✨Contest Time! Can you guess the organ? Last 3D Organ of the contest!🧠👀Make sure to drop your guess in the comments and retweet! 📝All correct answers enter a prize raffle! 🏆#HRA #GuessTheOrgan @_hubmap @NIH @sennetresearch
Attending the #HealthITSummit24? Join Dr. Chris Kinsinger, #NIHCommonFund, on 9/19 for a panel discussion on #AI Adoption in the Health Care Ecosystem. #ArtificialIntelligence #Bridge2AI
Check out this year's winners of the #NIH_SPARC codeathon, who made new #FAIRdata visualization platforms, analysis pipelines, and #AI tools to enhance use of SPARC #neuromodulation data. Learn more about the projects: bit.ly/3AEai3K
Researchers used MRI and deep learning to create a 3D virtual stomach model showing how it moves during digestion. This could enhance how we diagnose & treat gastrointestinal problems. bit.ly/4fflAvk #NIH_SPARC #OpenData @UMich @AucklandUni @FloreyInstitute @sheffielduni
Unfortunately, the #Bridge2AI webinar scheduled for today (8/20) at 3PM ET on the #ethics of voice #AI (#ArtificialIntelligence) is canceled. We hope you will join us next month.
🥈 Runners up of SPARC-FAIR global codeathon organized by NIH and SPARC Data and Resource Center.
Thank you @sparc_science for the amazing experience and opportunity.
#bioengineering #biotech #biotechnology
Interested in using single-cell and spatial omics methods in your #CancerResearch? Do you have creative approaches for analyzing and integrating these data? Check out the @NCIHTAN Data Jamboree, held in-person Nov 6-8 2024 in Bethesda, MD!
Apply by Sept 6: humantumoratlas.org/jamboree
It's the moment we've all been waiting for! The 2024 SPARC FAIR hashtag #Codeathon winners announcement is today. Get to know the teams on our YouTube channel. Watch each team's presentation and celebrate their amazing projects! bit.ly/3AEai3K #NIH_SPARC #OpenData #FAIR
We issued a request to gather input about scientific opportunities and research challenges in enabling #PrecisionMedicine with #AI by integrating #MedicalImaging with other data types! Submit your innovative ideas by 9/23 go.nih.gov/0c7NxW4
Check out the most recent UDN publication!
Key takeaway: Genome-wide DNA methylation analysis identified candidate variants in 2% of unsolved DEE cases, including rare DMRs, episignatures, and pathogenic #CHD2 variants.
pubmed.ncbi.nlm.nih.gov/39107278/
Celebrate all the great projects from the 2024 SPARC FAIR #Codeathon! Join us today and congratulate the winners! 4:00 PM EDT. RSVP here: forms.gle/bMedNTtj4vKf7k… #NIH_SPARC #OpenData
Coming Soon!!!! Put it on your calendars now! October 5th, 9am -3pm sciencefest.indiana.edu #mappingscience
Discover the power of the #KidsFirstDRC Portal's new visualization capabilities that let you interactively explore datasets. Uncover critical insights into pediatric conditions and see the most impactful genetic variants at a glance. Explore now: buff.ly/4cu9hbX
#Research
Coming up: #A2CPS Journal Club with Dr. Gwen Sowa MD PhD @PittTweet on Phenotyping Low Back Pain Thurs Sep 5 at 9 PT/noon ET FREE! Register today: surveymonkey.com/r/A2CPSJournal…
Frontiers in Digital Health is delighted to partner with Bridge2AI-Voice, funded by the NIH Common Fund, to explore voice as a health biomarker. They generate diverse, ethical voice datasets and build networks via symposiums and education.
@Bridge2aiVoice
b2ai-voice.org
Registration open for this meeting for a bit longer. A few spots left sbpdiscovery.org/calendar/molec… Submit an Abstract and present a Short Talk or Poster. This is a small meeting, so a great networking opportunity w/ great speakers. Please circulate.
Join our Virtual Symposium in Big #DataScience on 8/8 @ 10 AM ET where the @MaayanLab trainees in the 2024 Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register: mountsinai.zoom.us/webinar/regist…
Check out the most recent UDN publication!
Key takeaway: A sibling pair had compound heterozygous VUS in the #TTNgene. Further reanalysis of RNAseq data with a different approach led to the diagnosis of congenital titinopathy.
pubmed.ncbi.nlm.nih.gov/38924341/
The 2024 SPARC FAIR Codeathon is next month. Check out the winners of last year’s Codeathon here: bit.ly/4cCZ0ee Apply to join a team by July 27th to participate this year. #OpenScience #NIH_SPARC #codeathon
🧪 The deadline is tomorrow to respond to the Notice of Special Interest (NOSI) on advancing data science approaches for COVID-19 testing technologies!
Explore existing data in RADx DataHub by July 16th, 2024. #COVID19 #DataScience
Respond here: bit.ly/4a4oFf3
Have you heard the news? The #NIHCommonFund issued a request to gather input about scientific opportunities and research challenges that may shape future activities! Submit your #innovative ideas in #Biomedical or #BehavioralResearch here: youtube.com/watch?v=SAi24Z…