Discover, Analyze, and Integrate NIH Common Fund Data
The NIH Common Fund programs generate diverse datasets from a variety of projects ranging from genomics to phenotypes. The Common Fund Data Ecosystem (CFDE) aims to facilitate improved discovery, reuse, integration, and analyses of these datasets to form novel hypothesis for accelerating discoveries in biomedical research.
The Common Fund Data Ecosystem (CFDE) aims to enable broad use of data generated by Common Fund Programs to accelerate hypothesis generation and discovery.
TRAINING & OUTREACH
LINCS Summer Traniees Virtual Symposium 2024
A virtual symposium hosted by the Ma’ayan Lab and the Mount Sinai Center for Bioinformatics will feature the accomplishments made by 10 summer trainees during a 10-week research-intensive full-time training program. The projects cover topics such as data integration, data visualization, LLM integration, and Knowledge Graphs in the field of biomedical data science and bioinformatics, leveraging the power of AI and other computational tools and methods.
Starts: August 8, 2024
Making data more FAIR
The Data Resource and Knowledge Centers are dedicated to enhancing the accessibility and utility of Common Fund-generated data and resources, striving to uphold the FAIR principles. This commitment serves as a catalyst for groundbreaking biomedical discoveries, fostering synergies across the diverse datasets within the Common Fund ecosystem, thereby unlocking novel avenues of research and innovation.
Findable
Accessible
Interoperable
Reusable
Social Media
Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.
Attn. supervisors of underrepresented groups researching Parkinson's disease. Apply for GP2's PhD Program to fund a trainee from an underrepresented background for a 3-year PhD in a Parkinson's or related field. Apply by July 31, 2024. bit.ly/4cVju1X #NIH_SPARC #Funding 
Team sign-ups close tomorrow. Don’t miss your chance to participate in the 2024 SPARC FAIR Codeathon. Help make data FAIR, and win a piece of the $50K prize pool. bit.ly/436EHlt #OpenData #NIH_SPARC #codeathon #FAIRdata #OpenScience 
There's still time to join a #NIH_SPARC virtual Codeathon team! Register by TOMORROW, July 27 to compete for a $50K prize pool and use your #DataScience knowledge to make SPARC #biomedical resources more #FAIR! bit.ly/436EHlt 
Don't forget to tune in next week on 7/29 at 1:30 PM ET for this lecture on #AI for #diabetes featuring #Bridge2AI Investigator Dr. Aaron Lee. Learn more: go.nih.gov/1WHVJ3f
The REVEAL project, led by SPARC PI John Osborn, is now enrolling participants! John is presenting today at #ISAN2024. "SPARC Infrastructure supporting Functional studies of vagal stimulation" bit.ly/3WDWajG #neuroscience #OpenScience #NIH_SPARC 
SPARC is at #ISAN2024. Today at Bramall Hall is the "Utilising NIH SPARC resources for ANS research" symposium led by SPARC PI Peter Hunter. Visit our table in Birmingham to learn more about what the SPARC Portal offers. bit.ly/4byvjKU #OpenData #NIH_SPARC @ISANautonomic 
From 3D neural mapping to cardiovascular control, #ISAN2024 covers the latest in #ANS research. Visit the #NIH_SPARC table to discover how we advance open science in this field. bit.ly/4byvjKU #neuroscience #OpenScience #NIH_SPARC @ISANautonomic #FAIRdata 
Tune in for the final #CommunityEngagementWorkshop event and discussions 7/25 to improve #data #accessiblility, #inclusivity and #CulturallyRelevant #research at the #NIHCommonFund! bit.ly/3RPLATR 
See SPARC at #ISAN2024! Visit our table in Birmingham to learn about the exciting upcoming Codeathon and stop by to get a demo of the SPARC portal! bit.ly/4byvjKU #neuroscience #OpenScience #NIH_SPARC @ISANautonomic 
Join the #NIHCommonFund #CommunityWorkshopEngagement panel discussion to learn how we can address immediate training needs in the #Biomedical & #BehavioralResearch community 7/25 at 9AM ET. Learn more about this session and other #data topics: bit.ly/3RPLATR 
What do SPARC and the Olympics have in common? Talent from across the globe all together to accomplish great things. You may have missed the Olympic trials but you still have time to sign up for a SPARC FAIR Codeathon team! bit.ly/436EHlt #NIH_SPARC #Paris2024 #Olympics 
Immune response left on read? #4DNucleome researchers discovered SARS-CoV-2 scrambles host chromatin 4D organization which keeps immune messengers from finding their messages in response to infection. Check out more here: go.nih.gov/oCf9yse 
Interested in #genomics analysis or #bioinformatics research? Apply to participate in a hybrid structural variants hackathon hosted by our #SMaHTnetwork researchers. Applications are due Aug 21, 2024, by 3pm CDT. Apply here: hgsc.bcm.edu/events/hackath… 
Check out the projects for the 2024 #NIH_SPARC Codeathon! Sign up today to build new #simulation tools, visualize neuronal #data, make SPARC resources more #FAIR, and compete for a $50K prize pool! bit.ly/436EHlt 
Interested in learning more about chronic pain measurement and prevention? Read about the #A2CPS program's new study that uses statistical modeling to more accurately measure chronic pain. go.nih.gov/2x4G3Ir
#NIHCommonFund #ChronicPain #PainResearch #PainManagement 
Don’t miss out on shaping the future of @NIH #data research at the #NIHCommonFund’s #CommunityEngagementWorkshop! Hear from diverse perspectives in the #biomedical & #BehavioralScience community 7/24-25 as they address challenges to enhance #data resources bit.ly/3RPLATR 
🧩Contest Time! It's time for a new image challenge! Can you guess the organ? 📷🔍 Drop your guess in the comments and retweet! 💬All correct answers enter a prize raffle! New challenge every Tuesday through mid-August! 🏆 #HRA #GuessTheOrgan @katycns @AndreasBueckle 
The CFDE-GlyGen team is excited to announce the upcoming CFDE-GlyGen Summer Interns Symposium, scheduled for July 25, 2024, from 1:00 to 3:00 PM EST.
gwu-edu.zoom.us/meeting/regist… 
See SPARC at ISAN 2024. #NIH_SPARC community members, Bizanti & Cheng will present 'Spatial mapping of neural data with 3D scaffolds' on 7/26. Their research was picked as editor's choice in @JPhysiol. bit.ly/4byvjKU @ariege_bizanti @ISANautonomic @ourmedschool #OpenData 
🎉 Huge Congratulations 🎉to @NabaLabUIC for correctly guessing the Mammary Gland!🏆Dive deeper into the fascinating details of the HRA 3D Reference Library: humanatlas.io/3d-reference-l… To claim your prize email cnscntr@iu.edu ✉️ #GuessTheOrgan @_hubmap @AndreasBueckle @katycns 
This Friday, July 26th, we are excited to announce that @katycns Katy Börner and Bruce Herr will be presenting "A Tour of the Human Reference Atlas v2.1" as part of the Common Fund Data Ecosystem’s Public Webinar Series:July 26, Time: 1:00-2:00 PM ET link: broadinstitute.zoom.us/webinar/regist… 
The Inhibition in the CNS GRS 2025 kicks off July 5-6 in Maine, followed by the Inhibition conference on July 6-11. Topics include GABAergic neurons, inhibitory modulation, and computational modeling. Apply now! bit.ly/4dHuW2g @GordonConf #NIH_SPARC #computationalmodels 
Researchers with the @NIH_CommonFund Cellular Senescence Network (@sennetresearch) share recommendations for detecting #senescent cells in different tissues in @NatRevMCB: nature.com/articles/s4158… #SenNet 
New @NIH_NCCIH-funded research from @UMNews and @NDSU shows that health disparity populations are underrepresented in clinical trials on back and neck pain, limiting the generalizability of the results. go.nih.gov/WJ1obqB
Check out the most recent UDN publication!
Key takeaway: Dysregulation of glutamine synthetase (GS) due to #GLUL variants was found to be associated with severe developmental delays and neurological issues.
pubmed.ncbi.nlm.nih.gov/38579670/
Can Voice #AI diagnose disease? Check out how #Bridge2AI investigator Dr. Bensoussan (@Bridge2aiVoice) and her students at @USFHealth are using #ArtificialIntelligence to detect disease. #MachineLearning #ML fox13news.com/video/1488225
From winning the 2022 SPARC FAIR Codeathon to powering real-world research, SPARC-me is transforming how we explore SPARC datasets. Learn more about this Python tool's success & join the 2024 Codeathon to revolutionize your research: bit.ly/3Wo6BHU #OpenData #NIH_SPARC 
A team of researchers, including our @somaticediting #SCGE investigators developed a promising #GeneEditing approach that might offer an opportunity for genetic intervention in patients with multiple forms of hearing loss ncats.nih.gov/news-events/ne… 
"When the Trash Builds Up and the Sink Doesn’t Drain: Lymphatic System Dysfunction Contributes to Migraine." A new study highlights reduced lymphatic vessel permeability in the #meninges as a novel mechanism underlying #migraine. Read more in MSC news.
l8r.it/akGu
Sign-ups are OPEN for the #NIH_SPARC 2024 #Codeathon! Register to use your #DataScience, #DataViz, and #Bioinformatics skills to make SPARC resource more #FAIR and compete for $50K in prizes! bit.ly/436EHlt 
Learn how to enhance #biomedical #data resources as we discuss #inclusivity and #accessibility in our #research! The #CommunityEngagementWorkshop by the #NIHCommonFund is hosting virtual discussions. Join us 7/24 and 7/25: bit.ly/3RPLATR 
Check out the most recent UDN publication!
Key takeaway: #TUBB4B variants identified were found to disrupt centriole and cilium biogenesis in primary ciliary dyskinesia, affecting microtubule dynamics and enabling classification of ciliopathies.
pubmed.ncbi.nlm.nih.gov/38662826/
Check out this #NIH Director’s Blog to learn more about a new method developed by our #SMaHTNetwork awardees that can detect early-stage #DNA sequencing errors!
Check out the newest installment of the SenNet Interview Series, featuring @nneretti and @Vidyani8 discussing their paper "SenNet recommendations for detecting senescent cells in different tissues" published with @SpringerNature in @NatRevMCB
youtube.com/watch?v=Fx68AE…
#ICYMI! Read about the updated #NIH_CFDE #data portal which allows users to query multiple #NIHCommonFund #biomedical #datasets. Check it out today: go.nih.gov/rxSfJj2 
Join us July 26th from 1-2 PM ET for the #CFDEPublicWebinarSeries, featuring "A Tour of the Human Reference Atlas v2.1" presented by Katy Börner and Bruce Herr from @_hubmap @sennetresearch! Register for the event here: broadinstitute.zoom.us/webinar/regist… 
Hear science leaders from diverse backgrounds discuss #accessibility, #inclusivity & #CulturallyRelevant data to shape outreach & training for the #biomedical & #BehavioralScience research community! Register for the #CommunityEngagementWorkshop 7/24-25: bit.ly/3RPLATR 
❗️In two hours❗️
July 15 (Monday): 2:00-3:00 PM ET
Webinar: NINDS Neural Exposome Top Priorities (NEXT) Working Group Strategic Planning Open Session
🔗 Follow this link for more details and registration: bit.ly/4cDoV5x 
Join #Bridge2AI tomorrow (7/16) at 3PM ET for a lecture on Policy and #Ethics in Innovation. Zoom link: bit.ly/3zfiAyn #AI #ML #ArtificialIntelligence #MachineLearning 
Check out the most recent UDN publication!
Key takeaway: A sibling pair had compound heterozygous VUS in the #TTNgene. Further reanalysis of RNAseq data with a different approach led to the diagnosis of congenital titinopathy.
pubmed.ncbi.nlm.nih.gov/38924341/
The 2024 SPARC FAIR Codeathon is next month. Check out the winners of last year’s Codeathon here: bit.ly/4cCZ0ee Apply to join a team by July 27th to participate this year. #OpenScience #NIH_SPARC #codeathon 
🧪 The deadline is tomorrow to respond to the Notice of Special Interest (NOSI) on advancing data science approaches for COVID-19 testing technologies!
Explore existing data in RADx DataHub by July 16th, 2024. #COVID19 #DataScience
Respond here: bit.ly/4a4oFf3 
First “Spatial Omics” conference organized by a major academic/professional society! 🤩🤩 Terrific line up and beautiful place in Rome. Can’t wait to catch up with many friends there 🤗🤗🤗
@EMBO @embl #spatialomics meetings.embo.org/event/24-spati…
Calling all neuromodulation researchers & clinicians! The #NANS25 Call for Abstracts is open. Submit your research by August 15th, 1 PM CT for a chance to present at the premier neuromodulation conference. Don't miss out! bit.ly/4eXLZxp #neuroscience #NIH_SPARC @NANS_ION 
Think you know the ins & outs of your innards? Try your luck on these 3D organ renderings from the #GuesstheOrgan contest run by the Human Reference Atlas (#HRA). You could win HRA swag! See if you are in sync with your inner workings!
The #NIHCommonFund will host a #CommunityEngagementWorkshop to share ideas about how to make #research #data more #Accessible, #Inclusive or #CulturallyRelevant. Tune in to one of our breakout sessions and join the conversation 7/24-25. bit.ly/3RPLATR 
DYK #GeneEditing could reverse hearing loss? Learn how our @somaticediting #SCGE researchers and their colleagues restored hearing in adult mice with a rare form of genetic deafness commonfund.nih.gov/editing/highli… 
Have you heard the news? The #NIHCommonFund issued a request to gather input about scientific opportunities and research challenges that may shape future activities! Submit your #innovative ideas in #Biomedical or #BehavioralResearch here: youtube.com/watch?v=SAi24Z… 
Are you interested in coding and winning cash prizes? The 2024 SPARC FAIR Codeathon is forming teams now! Don't miss your chance to win up to $50,000. The deadline to join a team is July 27th. Learn more and sign up today: bit.ly/436EHlt #NIH_SPARC #opendata #codeathon 
Do you use #biomedical #datasets in your research? Read about the new #DataPortal from #NIH_CFDE! This portal allows users to query #NIHCommonFund #data sets. It also provides access to trainings and other resources. Check it out today: go.nih.gov/rxSfJj2 
The SPARC repository was developed to curate and publish high-quality datasets related to the autonomic nervous system. Now, all peripheral nervous system data can be hosted. Learn more and contribute your data on the SPARC Portal. sparc.science #OpenScience #NIH_SPARC 
Today, Rene is presenting GlyGen at the 2024 Mid-South Glycoscience Meeting (University of Mississippi) pharm.olemiss.edu/glycore/2024-m…
🧩✨ Contest Time! Can you guess the organ? 🧠👀 Drop your guess in the comments and retweet! 📝 All correct answers enter a prize raffle! New challenge every Tuesday (starting today) through mid-August! 🏆 #HRA #GuessTheOrgan @AndreasBueckle 
Tune in next week (7/16 at 3PM ET) for this #Bridge2AI lecture on Policy and #Ethics in #Innovation. Learn how to develop and apply ethics and #equity principles to engagement tools in #AI & #ML. bit.ly/3zfiAyn 
NANS 2025 Call for Abstracts is Now Open! The submission deadline is Thursday, August 15, 2024 at 1 PM Central Time.
Join SPARC at #NANS25. bit.ly/4eXLZxp
#NIH_SPARC #OpenScience @NANS_ION
Mark your calendars for this upcoming lecture on 7/29 at 1:30 PM ET featuring #Bridge2AI Investigator Dr. Aaron Lee as he talks about leveraging #AI for #diabetes. Learn more: go.nih.gov/1WHVJ3f
The #NIHCommonFund is hosting a #DataEngagementWorkshop to share ideas to improve #data #accessibility and #inclusivity in the #Biomedical & #BehavioralResearch community! Join the virtual interactive discussion 7/24-7/25: bit.ly/3RPLATR 
Our @somaticediting #SCGE researchers engineered an adeno-associated virus (#AAV) that safely crosses the blood-brain barrier and delivers a set of molecular tools that can turn off the gene that causes prion diseases broadinstitute.org/news/therapy-c… 
#NIHCommonFund programs span the entire continuum of #Biomedical and #BehavioralResearch, including those aimed at enhancing the #BiomedicalWorkforce. We’re looking for #innovative ideas to shape future Common Fund activities! Respond by 8/10/2024: go.nih.gov/OH5JNsP 
Great opportunity! There's a new chance for ACTIVE grants to add on a supplement. Check out the details here: bit.ly/4eQGUXK Need assistance with your Material and Data Sharing Plan? Reach out to us—we're here to help! #ResearchFunding #OpenData #NIH_SPARC
Make your voice heard with this @NIH @NIHendaddiction #RFI as they set #painresearch priorities for the coming years a2cps.org/news/latest/
Interested in conducting #CommunityEngaged Research? Attend the Ensuring Ethical Research in Our Communities by the Community Engagement Alliance Consultative Resource #CEACR & Community Partnerships to Advance Science for Society #ComPASS 7/10 at 1 PM ET us06web.zoom.us/webinar/regist… 
Ever feel a glitch in your extracellular matrix? This image from #_hubmap researcher Dr. Dharma Pally @NabaLabUIC shows molecules in cells that make up the cytoskeleton & bring structure to your internal reality. Now, pull your cellf together! 📷 #matrixiseverywhere 
Save the date for this virtual discussion on emerging #ESLI topics. Join #Bridge2AI on 7/16 at 3PM ET to learn how to apply #ethics and #equity principles to engagement tools in #AI and #ML. bit.ly/3zfiAyn 
Join the conversation on 7/24-7/25 to help the #NIHCommonFund make our #research #data more #Accessible, #Inclusive and #CulturallyRelevant. bit.ly/3RPLATR 
We want to hear your ideas to advance cutting-edge #research methodologies, address critical gaps in knowledge and enhance new #technology! Be a part of shaping potential new #NIHCommonFund activities. Responses due 8/10. go.nih.gov/OH5JNsP 
Learn how our @somaticediting #SCGE researchers and their colleagues developed an #epigenetic technology that can be safely and efficiently delivered to the brain to potentially treat #prion diseases. broadinstitute.org/news/therapy-c… 
#ICYMI Registration is still open for the Nuclear Architecture Meeting hosted by #4DNucleome to be held in San Diego, CA Dec 11-13, 2024. The deadline to submit an abstract for a talk or poster is Oct 4. Trainees, students, and postdocs encouraged to apply bit.ly/3X9gha0 
Registration is still open for the #glycotime online seminar and workshop on “Exploring Glycan and Protein Function in GlyGen” on July 5th at 11am ET. 
Calling all spatial biology & pathology experts. Join us at the 2024 From Atlas to Practice Innovation Lab to revolutionize disease diagnosis & treatment. Apply by June 30. bit.ly/3XIt3Nd #spatialbiology #pathology #innovation @_hubmap
Early bird registration for INCF 2024 closes today! Register now for a discount. #NIH_SPARC #OpenScience bit.ly/4dLheLI
Attending #Nutrition2024 in Chicago? Check out Booth 10 June 29-July 2 to learn about our #NutritionforPrecisionHealth study! We are developing algorithms to predict individual responses to diets and nutrients. Learn more about the study here: nutritionforprecisionhealth.org 
Mark your calendars! The #NIHCommonFund is hosting a 1.5-day workshop on 7/24-7/25 to hear from the community about how to make our #biomedical #data resources more #inclusive. Register for this event on now. bit.ly/3RPLATR 
Join our #NutritionforPrecisionHealth program at the #Nutrition2024 conference in Chicago from 3pm–4:30pm CT on Saturday, June 29 for a session on methods used in the study to assess #diet, the #microbiome, and #metabolomics. View the schedule: nutrition2024.eventscribe.net/agenda.asp?pfp… 
Interested in shaping the future of #Biomedical and #BehavioralResearch? The #NIHCommonFund wants to hear from you! We are looking ideas for resources, tools, or knowledge to address important challenges or opportunities. Responses are due 8/10. go.nih.gov/OH5JNsP 
Can you #code? 2024 SPARC FAIR #Codeathon Teams are being formed! Don't miss out on up to US$50K cash & prizes. Join a team today—deadline 7/27 for the in-the-cloud Codeathon 8/10 to 8/12. bit.ly/436EHlt #NIH_SPARC #opendata 
DYK there are no treatments for #prion diseases - #neurodegenerative diseases caused by unfolded proteins? Researchers, including @somaticediting #SCGE investigators, developed a system to silence the gene responsible for prion diseases in the brain: broadinstitute.org/news/therapy-c… 
Want to reuse spatial omics and #SingleCell sequence data to advance the field of #SpatialBbiology? Submit a short project pitch to be selected for @NCIHTAN Data Jamboree on the NIH campus in Bethesda, MD, November 6-8, 2024 by Friday, July 12, 2024! humantumoratlas.org/jamboree 
Interested in #proteins and understudied areas of #biology that have a high impact on human health? Tune in this Fri (6/28) at 1PM ET to learn more about the Illuminating the #DruggableGenome (#IDG) project. Register: bit.ly/3KZwBmA. #NIH_CFDE 
Want to build #bioinformatics workflows with ease? Learn about the Playbook Workflow Builder & how to create workflows in this virtual workshop on 6/25 at 1PM ET. Learn more: bit.ly/4blDfy6 #DataScience #Biomedicine #DataEcosystem 
Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices biorxiv.org/content/10.110…
Join us on Tuesday, June 25th at 1:00 PM ET for a virtual workshop introducing the Playbook Workflow Builder: playbook-workflow-builder.cloud, a new #bioinformatics platform to interactively create #workflows with no coding skills. Registration: mssm.zoom.us/webinar/regist… #genomics #omics 
Please help our friends at @NIH_CommonFund by weighing in on your research needs and ideas!
Rare Disease Day at @NIH 2024 has passed, but our commitment to the #RareDiseases community continues. Read the @NIHRecord feature story showcasing patients’ & caregivers’ voices, meaningful scientific discoveries, new opportunities, and more: go.nih.gov/aNzY4FN #RDDNIH 
🗣️ Calling all Researchers, we need your input! Participate in our survey before June 21 to help prepare for NIDDK's AI in Precision Medicine workshops. Your expertise is invaluable!
Link: forms.gle/dn9F46dWGftWvZ… 🔬
#DiabetesResearch #AI #PrecisionMedicine #NIDDK #AI #ML
It's Day 3 and we're featuring @pdtr124's image! He was inspired by cell alignment using the cytoskeleton as a proxy with respect to SNED1 fibers in the ECM. Looks like an exciting imaging for an exciting talk! #MatrixisEverywhere 
A great talk by @AviMaayan and his team on Tuesday at the @SinaiGenetics WIP in Computational Biology and Data Science, showcasing their excellent new bioinformatic interfaces, including Rummagene and others. 
Are you ready to unlock the full potential of big data in pediatric research at no charge to you? Join the Kids First CFDE Pediatric PowerUp for an immersive learning experience. Let's drive progress together: buff.ly/4cnD1az
#KidsFirst #CFDE #BigData #ResearchInnovation 
Applying for an @NIH grant this summer? ☀ Here are some key resources to keep handy! 📝
Explore more: grants.nih.gov/grants/how-to-… #NIHgrants 
Join us for the 2nd installment of our new webinar series featuring resources & tools within the #NIH_CFDE @CFDEKC @AviMaayan @CfdeWorkbench @LINCSProgram
On Friday 5/31 @ 1 PM ET, members of the @CfdeWorkbench will introduce new tools to query the @LINCSProgram L1000 data and gene expression signatures automatically extracted from @NCBI #GEO rummageo.com register: cfde.info 
Unlocking the mysteries of childhood diseases by studying #ChildhoodCancer and #CongenitalDisorders together, #KidsFirstDRC and #KidsFirst researchers find common threads in the body's code. Together, we can fight for healthier futures. 
Join #KidsFirst and @kidsfirstDRC on May 29 from 11 AM-12PM ET for a transformative look into #pediatric research at the Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures.” Live demos & insightful discussions await. Register: nih.zoomgov.com/meeting/regist…
#TogetherWeRise 
Are you interested in #neurosurgery research? Check out this article by our #NIHHighRisk Research Program #NewInnovator awardee Shadi Dayeh and colleagues who developed a new tool to visualize brain activity. Learn more: pubmed.ncbi.nlm.nih.gov/38657026/ 
Social Media
Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.
Attn. supervisors of underrepresented groups researching Parkinson's disease. Apply for GP2's PhD Program to fund a trainee from an underrepresented background for a 3-year PhD in a Parkinson's or related field. Apply by July 31, 2024. bit.ly/4cVju1X #NIH_SPARC #Funding
Team sign-ups close tomorrow. Don’t miss your chance to participate in the 2024 SPARC FAIR Codeathon. Help make data FAIR, and win a piece of the $50K prize pool. bit.ly/436EHlt #OpenData #NIH_SPARC #codeathon #FAIRdata #OpenScience
There's still time to join a #NIH_SPARC virtual Codeathon team! Register by TOMORROW, July 27 to compete for a $50K prize pool and use your #DataScience knowledge to make SPARC #biomedical resources more #FAIR! bit.ly/436EHlt
Don't forget to tune in next week on 7/29 at 1:30 PM ET for this lecture on #AI for #diabetes featuring #Bridge2AI Investigator Dr. Aaron Lee. Learn more: go.nih.gov/1WHVJ3f
The REVEAL project, led by SPARC PI John Osborn, is now enrolling participants! John is presenting today at #ISAN2024. "SPARC Infrastructure supporting Functional studies of vagal stimulation" bit.ly/3WDWajG #neuroscience #OpenScience #NIH_SPARC
SPARC is at #ISAN2024. Today at Bramall Hall is the "Utilising NIH SPARC resources for ANS research" symposium led by SPARC PI Peter Hunter. Visit our table in Birmingham to learn more about what the SPARC Portal offers. bit.ly/4byvjKU #OpenData #NIH_SPARC @ISANautonomic
From 3D neural mapping to cardiovascular control, #ISAN2024 covers the latest in #ANS research. Visit the #NIH_SPARC table to discover how we advance open science in this field. bit.ly/4byvjKU #neuroscience #OpenScience #NIH_SPARC @ISANautonomic #FAIRdata
Tune in for the final #CommunityEngagementWorkshop event and discussions 7/25 to improve #data #accessiblility, #inclusivity and #CulturallyRelevant #research at the #NIHCommonFund! bit.ly/3RPLATR
See SPARC at #ISAN2024! Visit our table in Birmingham to learn about the exciting upcoming Codeathon and stop by to get a demo of the SPARC portal! bit.ly/4byvjKU #neuroscience #OpenScience #NIH_SPARC @ISANautonomic
Join the #NIHCommonFund #CommunityWorkshopEngagement panel discussion to learn how we can address immediate training needs in the #Biomedical & #BehavioralResearch community 7/25 at 9AM ET. Learn more about this session and other #data topics: bit.ly/3RPLATR
What do SPARC and the Olympics have in common? Talent from across the globe all together to accomplish great things. You may have missed the Olympic trials but you still have time to sign up for a SPARC FAIR Codeathon team! bit.ly/436EHlt #NIH_SPARC #Paris2024 #Olympics
Immune response left on read? #4DNucleome researchers discovered SARS-CoV-2 scrambles host chromatin 4D organization which keeps immune messengers from finding their messages in response to infection. Check out more here: go.nih.gov/oCf9yse
Interested in #genomics analysis or #bioinformatics research? Apply to participate in a hybrid structural variants hackathon hosted by our #SMaHTnetwork researchers. Applications are due Aug 21, 2024, by 3pm CDT. Apply here: hgsc.bcm.edu/events/hackath…
Check out the projects for the 2024 #NIH_SPARC Codeathon! Sign up today to build new #simulation tools, visualize neuronal #data, make SPARC resources more #FAIR, and compete for a $50K prize pool! bit.ly/436EHlt
Interested in learning more about chronic pain measurement and prevention? Read about the #A2CPS program's new study that uses statistical modeling to more accurately measure chronic pain. go.nih.gov/2x4G3Ir
#NIHCommonFund #ChronicPain #PainResearch #PainManagement
Don’t miss out on shaping the future of @NIH #data research at the #NIHCommonFund’s #CommunityEngagementWorkshop! Hear from diverse perspectives in the #biomedical & #BehavioralScience community 7/24-25 as they address challenges to enhance #data resources bit.ly/3RPLATR
🧩Contest Time! It's time for a new image challenge! Can you guess the organ? 📷🔍 Drop your guess in the comments and retweet! 💬All correct answers enter a prize raffle! New challenge every Tuesday through mid-August! 🏆 #HRA #GuessTheOrgan @katycns @AndreasBueckle
The CFDE-GlyGen team is excited to announce the upcoming CFDE-GlyGen Summer Interns Symposium, scheduled for July 25, 2024, from 1:00 to 3:00 PM EST.
gwu-edu.zoom.us/meeting/regist…
See SPARC at ISAN 2024. #NIH_SPARC community members, Bizanti & Cheng will present 'Spatial mapping of neural data with 3D scaffolds' on 7/26. Their research was picked as editor's choice in @JPhysiol. bit.ly/4byvjKU @ariege_bizanti @ISANautonomic @ourmedschool #OpenData
🎉 Huge Congratulations 🎉to @NabaLabUIC for correctly guessing the Mammary Gland!🏆Dive deeper into the fascinating details of the HRA 3D Reference Library: humanatlas.io/3d-reference-l… To claim your prize email cnscntr@iu.edu ✉️ #GuessTheOrgan @_hubmap @AndreasBueckle @katycns
This Friday, July 26th, we are excited to announce that @katycns Katy Börner and Bruce Herr will be presenting "A Tour of the Human Reference Atlas v2.1" as part of the Common Fund Data Ecosystem’s Public Webinar Series:July 26, Time: 1:00-2:00 PM ET link: broadinstitute.zoom.us/webinar/regist…
The Inhibition in the CNS GRS 2025 kicks off July 5-6 in Maine, followed by the Inhibition conference on July 6-11. Topics include GABAergic neurons, inhibitory modulation, and computational modeling. Apply now! bit.ly/4dHuW2g @GordonConf #NIH_SPARC #computationalmodels
Researchers with the @NIH_CommonFund Cellular Senescence Network (@sennetresearch) share recommendations for detecting #senescent cells in different tissues in @NatRevMCB: nature.com/articles/s4158… #SenNet
New @NIH_NCCIH-funded research from @UMNews and @NDSU shows that health disparity populations are underrepresented in clinical trials on back and neck pain, limiting the generalizability of the results. go.nih.gov/WJ1obqB
Check out the most recent UDN publication!
Key takeaway: Dysregulation of glutamine synthetase (GS) due to #GLUL variants was found to be associated with severe developmental delays and neurological issues.
pubmed.ncbi.nlm.nih.gov/38579670/
Can Voice #AI diagnose disease? Check out how #Bridge2AI investigator Dr. Bensoussan (@Bridge2aiVoice) and her students at @USFHealth are using #ArtificialIntelligence to detect disease. #MachineLearning #ML fox13news.com/video/1488225
From winning the 2022 SPARC FAIR Codeathon to powering real-world research, SPARC-me is transforming how we explore SPARC datasets. Learn more about this Python tool's success & join the 2024 Codeathon to revolutionize your research: bit.ly/3Wo6BHU #OpenData #NIH_SPARC
A team of researchers, including our @somaticediting #SCGE investigators developed a promising #GeneEditing approach that might offer an opportunity for genetic intervention in patients with multiple forms of hearing loss ncats.nih.gov/news-events/ne…
"When the Trash Builds Up and the Sink Doesn’t Drain: Lymphatic System Dysfunction Contributes to Migraine." A new study highlights reduced lymphatic vessel permeability in the #meninges as a novel mechanism underlying #migraine. Read more in MSC news.
l8r.it/akGu
Sign-ups are OPEN for the #NIH_SPARC 2024 #Codeathon! Register to use your #DataScience, #DataViz, and #Bioinformatics skills to make SPARC resource more #FAIR and compete for $50K in prizes! bit.ly/436EHlt
Learn how to enhance #biomedical #data resources as we discuss #inclusivity and #accessibility in our #research! The #CommunityEngagementWorkshop by the #NIHCommonFund is hosting virtual discussions. Join us 7/24 and 7/25: bit.ly/3RPLATR
Check out the most recent UDN publication!
Key takeaway: #TUBB4B variants identified were found to disrupt centriole and cilium biogenesis in primary ciliary dyskinesia, affecting microtubule dynamics and enabling classification of ciliopathies.
pubmed.ncbi.nlm.nih.gov/38662826/
Check out this #NIH Director’s Blog to learn more about a new method developed by our #SMaHTNetwork awardees that can detect early-stage #DNA sequencing errors!
Check out the newest installment of the SenNet Interview Series, featuring @nneretti and @Vidyani8 discussing their paper "SenNet recommendations for detecting senescent cells in different tissues" published with @SpringerNature in @NatRevMCB
youtube.com/watch?v=Fx68AE…
#ICYMI! Read about the updated #NIH_CFDE #data portal which allows users to query multiple #NIHCommonFund #biomedical #datasets. Check it out today: go.nih.gov/rxSfJj2
Join us July 26th from 1-2 PM ET for the #CFDEPublicWebinarSeries, featuring "A Tour of the Human Reference Atlas v2.1" presented by Katy Börner and Bruce Herr from @_hubmap @sennetresearch! Register for the event here: broadinstitute.zoom.us/webinar/regist…
Hear science leaders from diverse backgrounds discuss #accessibility, #inclusivity & #CulturallyRelevant data to shape outreach & training for the #biomedical & #BehavioralScience research community! Register for the #CommunityEngagementWorkshop 7/24-25: bit.ly/3RPLATR
❗️In two hours❗️
July 15 (Monday): 2:00-3:00 PM ET
Webinar: NINDS Neural Exposome Top Priorities (NEXT) Working Group Strategic Planning Open Session
🔗 Follow this link for more details and registration: bit.ly/4cDoV5x
Join #Bridge2AI tomorrow (7/16) at 3PM ET for a lecture on Policy and #Ethics in Innovation. Zoom link: bit.ly/3zfiAyn #AI #ML #ArtificialIntelligence #MachineLearning
Check out the most recent UDN publication!
Key takeaway: A sibling pair had compound heterozygous VUS in the #TTNgene. Further reanalysis of RNAseq data with a different approach led to the diagnosis of congenital titinopathy.
pubmed.ncbi.nlm.nih.gov/38924341/
The 2024 SPARC FAIR Codeathon is next month. Check out the winners of last year’s Codeathon here: bit.ly/4cCZ0ee Apply to join a team by July 27th to participate this year. #OpenScience #NIH_SPARC #codeathon
🧪 The deadline is tomorrow to respond to the Notice of Special Interest (NOSI) on advancing data science approaches for COVID-19 testing technologies!
Explore existing data in RADx DataHub by July 16th, 2024. #COVID19 #DataScience
Respond here: bit.ly/4a4oFf3
First “Spatial Omics” conference organized by a major academic/professional society! 🤩🤩 Terrific line up and beautiful place in Rome. Can’t wait to catch up with many friends there 🤗🤗🤗
@EMBO @embl #spatialomics meetings.embo.org/event/24-spati…
Calling all neuromodulation researchers & clinicians! The #NANS25 Call for Abstracts is open. Submit your research by August 15th, 1 PM CT for a chance to present at the premier neuromodulation conference. Don't miss out! bit.ly/4eXLZxp #neuroscience #NIH_SPARC @NANS_ION
Think you know the ins & outs of your innards? Try your luck on these 3D organ renderings from the #GuesstheOrgan contest run by the Human Reference Atlas (#HRA). You could win HRA swag! See if you are in sync with your inner workings!
The #NIHCommonFund will host a #CommunityEngagementWorkshop to share ideas about how to make #research #data more #Accessible, #Inclusive or #CulturallyRelevant. Tune in to one of our breakout sessions and join the conversation 7/24-25. bit.ly/3RPLATR
DYK #GeneEditing could reverse hearing loss? Learn how our @somaticediting #SCGE researchers and their colleagues restored hearing in adult mice with a rare form of genetic deafness commonfund.nih.gov/editing/highli…
Have you heard the news? The #NIHCommonFund issued a request to gather input about scientific opportunities and research challenges that may shape future activities! Submit your #innovative ideas in #Biomedical or #BehavioralResearch here: youtube.com/watch?v=SAi24Z…
Are you interested in coding and winning cash prizes? The 2024 SPARC FAIR Codeathon is forming teams now! Don't miss your chance to win up to $50,000. The deadline to join a team is July 27th. Learn more and sign up today: bit.ly/436EHlt #NIH_SPARC #opendata #codeathon
Do you use #biomedical #datasets in your research? Read about the new #DataPortal from #NIH_CFDE! This portal allows users to query #NIHCommonFund #data sets. It also provides access to trainings and other resources. Check it out today: go.nih.gov/rxSfJj2
The SPARC repository was developed to curate and publish high-quality datasets related to the autonomic nervous system. Now, all peripheral nervous system data can be hosted. Learn more and contribute your data on the SPARC Portal. sparc.science #OpenScience #NIH_SPARC
Today, Rene is presenting GlyGen at the 2024 Mid-South Glycoscience Meeting (University of Mississippi) pharm.olemiss.edu/glycore/2024-m…
🧩✨ Contest Time! Can you guess the organ? 🧠👀 Drop your guess in the comments and retweet! 📝 All correct answers enter a prize raffle! New challenge every Tuesday (starting today) through mid-August! 🏆 #HRA #GuessTheOrgan @AndreasBueckle
Tune in next week (7/16 at 3PM ET) for this #Bridge2AI lecture on Policy and #Ethics in #Innovation. Learn how to develop and apply ethics and #equity principles to engagement tools in #AI & #ML. bit.ly/3zfiAyn
NANS 2025 Call for Abstracts is Now Open! The submission deadline is Thursday, August 15, 2024 at 1 PM Central Time.
Join SPARC at #NANS25. bit.ly/4eXLZxp
#NIH_SPARC #OpenScience @NANS_ION
Mark your calendars for this upcoming lecture on 7/29 at 1:30 PM ET featuring #Bridge2AI Investigator Dr. Aaron Lee as he talks about leveraging #AI for #diabetes. Learn more: go.nih.gov/1WHVJ3f
The #NIHCommonFund is hosting a #DataEngagementWorkshop to share ideas to improve #data #accessibility and #inclusivity in the #Biomedical & #BehavioralResearch community! Join the virtual interactive discussion 7/24-7/25: bit.ly/3RPLATR
Our @somaticediting #SCGE researchers engineered an adeno-associated virus (#AAV) that safely crosses the blood-brain barrier and delivers a set of molecular tools that can turn off the gene that causes prion diseases broadinstitute.org/news/therapy-c…
#NIHCommonFund programs span the entire continuum of #Biomedical and #BehavioralResearch, including those aimed at enhancing the #BiomedicalWorkforce. We’re looking for #innovative ideas to shape future Common Fund activities! Respond by 8/10/2024: go.nih.gov/OH5JNsP
Great opportunity! There's a new chance for ACTIVE grants to add on a supplement. Check out the details here: bit.ly/4eQGUXK Need assistance with your Material and Data Sharing Plan? Reach out to us—we're here to help! #ResearchFunding #OpenData #NIH_SPARC
Make your voice heard with this @NIH @NIHendaddiction #RFI as they set #painresearch priorities for the coming years a2cps.org/news/latest/
Interested in conducting #CommunityEngaged Research? Attend the Ensuring Ethical Research in Our Communities by the Community Engagement Alliance Consultative Resource #CEACR & Community Partnerships to Advance Science for Society #ComPASS 7/10 at 1 PM ET us06web.zoom.us/webinar/regist…
Ever feel a glitch in your extracellular matrix? This image from #_hubmap researcher Dr. Dharma Pally @NabaLabUIC shows molecules in cells that make up the cytoskeleton & bring structure to your internal reality. Now, pull your cellf together! 📷 #matrixiseverywhere
Save the date for this virtual discussion on emerging #ESLI topics. Join #Bridge2AI on 7/16 at 3PM ET to learn how to apply #ethics and #equity principles to engagement tools in #AI and #ML. bit.ly/3zfiAyn
Join the conversation on 7/24-7/25 to help the #NIHCommonFund make our #research #data more #Accessible, #Inclusive and #CulturallyRelevant. bit.ly/3RPLATR
We want to hear your ideas to advance cutting-edge #research methodologies, address critical gaps in knowledge and enhance new #technology! Be a part of shaping potential new #NIHCommonFund activities. Responses due 8/10. go.nih.gov/OH5JNsP
Learn how our @somaticediting #SCGE researchers and their colleagues developed an #epigenetic technology that can be safely and efficiently delivered to the brain to potentially treat #prion diseases. broadinstitute.org/news/therapy-c…
#ICYMI Registration is still open for the Nuclear Architecture Meeting hosted by #4DNucleome to be held in San Diego, CA Dec 11-13, 2024. The deadline to submit an abstract for a talk or poster is Oct 4. Trainees, students, and postdocs encouraged to apply bit.ly/3X9gha0
Registration is still open for the #glycotime online seminar and workshop on “Exploring Glycan and Protein Function in GlyGen” on July 5th at 11am ET.
Calling all spatial biology & pathology experts. Join us at the 2024 From Atlas to Practice Innovation Lab to revolutionize disease diagnosis & treatment. Apply by June 30. bit.ly/3XIt3Nd #spatialbiology #pathology #innovation @_hubmap
Early bird registration for INCF 2024 closes today! Register now for a discount. #NIH_SPARC #OpenScience bit.ly/4dLheLI
Attending #Nutrition2024 in Chicago? Check out Booth 10 June 29-July 2 to learn about our #NutritionforPrecisionHealth study! We are developing algorithms to predict individual responses to diets and nutrients. Learn more about the study here: nutritionforprecisionhealth.org
Mark your calendars! The #NIHCommonFund is hosting a 1.5-day workshop on 7/24-7/25 to hear from the community about how to make our #biomedical #data resources more #inclusive. Register for this event on now. bit.ly/3RPLATR
Join our #NutritionforPrecisionHealth program at the #Nutrition2024 conference in Chicago from 3pm–4:30pm CT on Saturday, June 29 for a session on methods used in the study to assess #diet, the #microbiome, and #metabolomics. View the schedule: nutrition2024.eventscribe.net/agenda.asp?pfp…
Interested in shaping the future of #Biomedical and #BehavioralResearch? The #NIHCommonFund wants to hear from you! We are looking ideas for resources, tools, or knowledge to address important challenges or opportunities. Responses are due 8/10. go.nih.gov/OH5JNsP
Can you #code? 2024 SPARC FAIR #Codeathon Teams are being formed! Don't miss out on up to US$50K cash & prizes. Join a team today—deadline 7/27 for the in-the-cloud Codeathon 8/10 to 8/12. bit.ly/436EHlt #NIH_SPARC #opendata
DYK there are no treatments for #prion diseases - #neurodegenerative diseases caused by unfolded proteins? Researchers, including @somaticediting #SCGE investigators, developed a system to silence the gene responsible for prion diseases in the brain: broadinstitute.org/news/therapy-c…
Want to reuse spatial omics and #SingleCell sequence data to advance the field of #SpatialBbiology? Submit a short project pitch to be selected for @NCIHTAN Data Jamboree on the NIH campus in Bethesda, MD, November 6-8, 2024 by Friday, July 12, 2024! humantumoratlas.org/jamboree
Interested in #proteins and understudied areas of #biology that have a high impact on human health? Tune in this Fri (6/28) at 1PM ET to learn more about the Illuminating the #DruggableGenome (#IDG) project. Register: bit.ly/3KZwBmA. #NIH_CFDE
Want to build #bioinformatics workflows with ease? Learn about the Playbook Workflow Builder & how to create workflows in this virtual workshop on 6/25 at 1PM ET. Learn more: bit.ly/4blDfy6 #DataScience #Biomedicine #DataEcosystem
Playbook Workflow Builder: Interactive Construction of Bioinformatics Workflows from a Network of Microservices biorxiv.org/content/10.110…
Join us on Tuesday, June 25th at 1:00 PM ET for a virtual workshop introducing the Playbook Workflow Builder: playbook-workflow-builder.cloud, a new #bioinformatics platform to interactively create #workflows with no coding skills. Registration: mssm.zoom.us/webinar/regist… #genomics #omics
Please help our friends at @NIH_CommonFund by weighing in on your research needs and ideas!
Rare Disease Day at @NIH 2024 has passed, but our commitment to the #RareDiseases community continues. Read the @NIHRecord feature story showcasing patients’ & caregivers’ voices, meaningful scientific discoveries, new opportunities, and more: go.nih.gov/aNzY4FN #RDDNIH
🗣️ Calling all Researchers, we need your input! Participate in our survey before June 21 to help prepare for NIDDK's AI in Precision Medicine workshops. Your expertise is invaluable!
Link: forms.gle/dn9F46dWGftWvZ… 🔬
#DiabetesResearch #AI #PrecisionMedicine #NIDDK #AI #ML
It's Day 3 and we're featuring @pdtr124's image! He was inspired by cell alignment using the cytoskeleton as a proxy with respect to SNED1 fibers in the ECM. Looks like an exciting imaging for an exciting talk! #MatrixisEverywhere
A great talk by @AviMaayan and his team on Tuesday at the @SinaiGenetics WIP in Computational Biology and Data Science, showcasing their excellent new bioinformatic interfaces, including Rummagene and others.
Are you ready to unlock the full potential of big data in pediatric research at no charge to you? Join the Kids First CFDE Pediatric PowerUp for an immersive learning experience. Let's drive progress together: buff.ly/4cnD1az
#KidsFirst #CFDE #BigData #ResearchInnovation
Applying for an @NIH grant this summer? ☀ Here are some key resources to keep handy! 📝
Explore more: grants.nih.gov/grants/how-to-… #NIHgrants
Join us for the 2nd installment of our new webinar series featuring resources & tools within the #NIH_CFDE @CFDEKC @AviMaayan @CfdeWorkbench @LINCSProgram
On Friday 5/31 @ 1 PM ET, members of the @CfdeWorkbench will introduce new tools to query the @LINCSProgram L1000 data and gene expression signatures automatically extracted from @NCBI #GEO rummageo.com register: cfde.info
Unlocking the mysteries of childhood diseases by studying #ChildhoodCancer and #CongenitalDisorders together, #KidsFirstDRC and #KidsFirst researchers find common threads in the body's code. Together, we can fight for healthier futures.
Join #KidsFirst and @kidsfirstDRC on May 29 from 11 AM-12PM ET for a transformative look into #pediatric research at the Spring Webinar, “Big Data Dialogue, The Next Catalyst for Cures.” Live demos & insightful discussions await. Register: nih.zoomgov.com/meeting/regist…
#TogetherWeRise
Are you interested in #neurosurgery research? Check out this article by our #NIHHighRisk Research Program #NewInnovator awardee Shadi Dayeh and colleagues who developed a new tool to visualize brain activity. Learn more: pubmed.ncbi.nlm.nih.gov/38657026/