Discover, Analyze, and Integrate NIH Common Fund Data

The NIH Common Fund programs generate diverse datasets from a variety of projects ranging from genomics to phenotypes. The Common Fund Data Ecosystem (CFDE) aims to facilitate improved discovery, reuse, integration, and analyses of these datasets to form novel hypothesis for accelerating discoveries in biomedical research.

The Common Fund Data Ecosystem (CFDE) aims to enable broad use of data generated by Common Fund Programs to accelerate hypothesis generation and discovery.

TRAINING & OUTREACH
Summer Research Program in Biomedical Big Data Science

The LINCS DCC Summer Research Training Program in Biomedical Big Data Science is a research intensive ten-week training program for undergraduates interested in bioinformatics. Summer fellows training in the Ma’ayan Lab at the Icahn School of Medicine at Mount Sinai conduct faculty-mentored research in the areas: data harmonization, machine learning, cloud computing, and dynamic data visualization.

Application deadline: February 1, 2025

Common Fund programs partnered with the CFDE

The NIH Common Fund is a funding entity within the NIH that supports bold scientific programs that catalyze discovery across all biomedical and behavioral research.

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Documentation

Learn more about the standards and protocols for accessing and submitting data to the portal

Documentation

Learn more about the standards and protocols for accessing and submitting data to the portal
fair

Making data more FAIR

The Data Resource and Knowledge Centers are dedicated to enhancing the accessibility and utility of Common Fund-generated data and resources, striving to uphold the FAIR principles. This commitment serves as a catalyst for groundbreaking biomedical discoveries, fostering synergies across the diverse datasets within the Common Fund ecosystem, thereby unlocking novel avenues of research and innovation.
  • Findable
  • Accessible
  • Interoperable
  • Reusable

Social Media

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.

Participant 229: female, age 4, with low muscle tone, motor delays, speech and language delays, and autism and a variant in RNU4-2 gene. Reach out if you know of others with similar symptoms and variant! undiagnosed.hms.harvard.edu/participants/p…
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Exciting News! The deadline for the Call for Science for the 2025 Voice AI Symposium has been extended to December 23, 2024! (eventsquid.com/event/26217) Bridge2AI-Voice is part of the @Bridge2AI program funded by the NIH Common Fund.
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The #NIHCommonFund #ComplementARIE program released a new #FundingOpportunity! Explore the announcement and begin preparing your applications now: go.nih.gov/gz5JDK6
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Cell atlasing got the weight of the world on your shoulders? Explore the Atlases Galore & Method of the Year 2024: #SpatialProteomics @naturemethods articles out this week if you need a roadmap to success! Like their namesake, these atlases will hold up well! #CellMapCrew #HuBMAP
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The #NIHCommonFund is hosting a workshop to discuss enabling #PrecisionMedicine with #AI through the integration of #MedicalImaging with other #Data types! Join the virtual interactive discussion 3/11-3/12: go.nih.gov/awiS2id
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📢 Time is running out! Submit your #AI (#ArtificialIntelligence) abstracts for the upcoming @Bridge2aiVoice Symposium. #Bridge2AI #NIHCommonFund
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8 billion. It's just a number. Today, our 3D tranche browser shows 8 billion* purchasable molecules in biologically relevant, docking-ready 3D formats. cartblanche22.docking.org/tranches/3d * Yes, yes, a wee bit of double counting. But, 8 billion!
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Older adults face growing housing instability, with 168,000 over 65 evicted yearly. A new study by the #NIHCommonFund’s #NIHFIRST program shows that home foreclosures may speed #MemoryDecline. Learn how #HousingInstability impacts health & cognition: go.nih.gov/9fiR3D9
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Are you a #biomedical #researcher interested in human voice #data paired with other clinical information? Learn about this data set from the #NIHCommonFund #Bridge2AI's Voice #AI (@Bridge2aiVoice) project that aims to develop #biomarkers for disease using the human voice data
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Ready to register for #APS2025? Don't forget to stop by the SPARC booth (#1414) in April. We'll be there to answer your questions and share the latest in open science. #NIH_SPARC #OpenScience @APSPhysiology bit.ly/4gZAYwM
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Tune in tomorrow (12/10) at 3 PM ET for the #NIHCommonFund's #Bridge2AI program discussion w/ Dr. Michelle Mello (@StanfordLaw & @StanfordMed) to hear about emerging legal trends in using #AI in #PatientCare. Learn more: bit.ly/3Vh1Y1F
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Today the week long @eLwazi_ODSP /@DSI_Africa Train-the-Trainer workshop commences! Workshop will cover using the eLwazi training workflow, developing competency-based curricula and managing computational training environments Looking forward to the impactful week!
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SPARC Community member Dr. Robert Gereau co-led a project that developed a promising implantable device for reversing opioid overdoses. This is a significant advancement in the effort to combat opioid misuse disorder. #NIH_SPARC #opioidcrisis #OpenScience science.org/doi/10.1126/sc…
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As we wrap up the year, let’s look back at the milestones achieved in pediatric research through the #KidsFirstDRC. From enhanced data resources to new search functionalities, we’ve made strides together. Stay tuned for continued progress in 2025! #PediatricResearch #YearInReview
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📢 Join us for the GlyGen Webinar Series! 🌟 🎙️ Speaker: Dr. John Cipollo, FDA 📅 Date: Dec 10, 2024 🕙 Time: 10 AM EST 🔍 Topic: Mass Spectrometry in Vaccines & Infectious Disease Don't miss this insightful talk! 📖 Details: wiki.glygen.org #glycotime
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Replying to @naturemethods
This month’s Technology Feature by Vivien Marx @metricausa highlights diverse international atlas projects, where they are now, and where they may be going in the future. nature.com/articles/s4159…
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The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳 For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread. nature.com/articles/s4159…
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Witness the latest pediatric research findings at the Kids First Winter Webinar: Champions of Discovery tomorrow, Dec 5th, at 10:30 AM ET. Register now: rebrand.ly/82yjs8q #ChampionsofDiscovery #KidsFirstDRC
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Come join us for a webinar presented by Dr. Changhan He on Friday, December 6, 2024 to learn more about this useful tool exFINDER! tab.so/0bc18539 #OpenData #NIH_SPARC @UCIrvine @dkNET_Info
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If you are attending Science Forum South Africa, please join us on Thursday, 05 Dec, for a sunrise session (07:30 am) on "Enhancing Health Outcomes Through Data Science: Conversations on Science for Society." #SFSA2024 @DSI_Africa @eLwazi_ODSP @UCTHealthSci @MRCza @synthymama,
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Want to learn more about the impact of social #bias on #ArtificialIntelligence (#AI) models used for hospital decision making (#EHR #data)? A new pilot from the #NIHCommonFund #Bridge2AI's @CHoRUS4AI team issues a caution to researchers: go.nih.gov/g8W2en3
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🚀 Call for Science is now open for the 2025 Voice AI Symposium in Tampa! Submit your work by **December 15th** for a chance to present at this premier event. #VoiceAI #PosterCompetition #AIforGood #VoiceBiomarkers #HealthcareInnovation #CallForScience #TechFair #Symposium
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We are thrilled to announce the release of v1 of the Bridge2AI-Voice Dataset, marking a major step forward in using voice as a biomarker of health. 💡 Visit Health Data Nexus to learn more healthdatanexus.ai/content/b2ai-v… #AIHealthcare #VoiceBiomarkers #Bridge2AI #Innovation #ethicalAI
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Our Winter Webinar is this week! Hear from top researchers and learn about the latest Kids First discoveries. Dec 5th, 10:30 AM ET. Join us: rebrand.ly/82yjs8q #KidsFirstDRC #ChampionsofDiscovery
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This Thanksgiving, let's appreciate the sweet side of science! "Grateful for the glycans that make our immune system tick. Without these sugar-coated molecules, we wouldn't have much to be thankful for! #GlycoThanksgiving"
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Don't miss the December 2nd deadline! Submit your abstract for #APS2025 by the end of the day. See you in Baltimore! bit.ly/4gZAYwM #NIH_SPARC #OpenScience @APSPhysiology
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The #NIH_SPARC Data and Resource Center December Office Hours for K-core #curation, MAP-core, SIM-core and DAT-core can be found here: bit.ly/DRCOfficeHours We love questions! We have answers. #computationalmodeling #data https://t.co/AClOJ3IGuQ
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Kids First is part of the NIH Common Fund Data Ecosystem—accelerating research together. Learn more: rebrand.ly/i5pxd4e #CFDE @NIHCommonFund
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Check out this #NIHCommonFund awardee and learn how the Texas Advanced Computing Center (TACC) will create a #CloudComputing workspace to support the #NIH_CFDE's #DataEcosystem. Read more: bit.ly/4i7LDWM
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🚨 GlyGen-CFDE Summer 2025 Internship 🔬 Focus: Bioinformatics & Data Wrangling 📅 Jun 2–Aug 1, 2025 📌 Apply by Jan 20, 2025 on Handshake 🔗 Details: wiki.glygen.org/GlyGen_Interns… #glycotime
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ICYMI: #NutritionforPrecisionHealth was featured on @CBSSunday! See firsthand what it’s like to join this study on how people respond differently to food. The study is led by #NIHCommonFund, Office of #NutritionResearch, @AllofUsResearch & others! allof-us.org/3UY1zkm
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📣 HEALTH CARE PROFESSIONALS: Register for FREE Rare Epilepsies Focused ECHO in 2025 led by National Experts *ATTENTION neurologists, RNs, genetic counselors, PCPs, ER doctors and other HCPs* Learn more and register at: lnkd.in/g32s62vz @UDNForg
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Check out the most recent UDN publication! ⭐️Key takeaway: Next-generation sequencing identified 85% of inherited metabolic diseases in the UDN cohort, uncovering many missed by traditional methods. pubmed.ncbi.nlm.nih.gov/39543639/ @UDNForg
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Have you ever wondered how you can recognize so many different smells? The #NIHCommonFund's #4DNucleome program researchers discovered it may have something to do with the organization of your #DNA during #CellDevelopment! Learn more: go.nih.gov/DMkYlGO
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Are you interested in using #genomic and #phenotypic data for #pediatric research? The #FundingOpportunity from the Gabriella Miller #KidsFirst program co-led by #NIHCommonFund, @theNCI, & @NICHD_NIH opens Jan 16th, 2025: go.nih.gov/oDE9bWv #BirthDefects #ChildhoodCancers
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Join the #NIHCommonFund's #Bridge2AI program for an #ethics discussion about using #AI tools in #PatientCare w/ Dr. Michelle Mello of @StanfordLaw @StanfordMed! Topics include potential malpractice liability risks & algorithmic discrimination. Learn more: bit.ly/3Vh1Y1F
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In a @DruggableGenome funded study, @SchlessingerLab, @gpandeylab, et al. developed KiNet, a user-friendly web portal for exploring kinase-substrate interactions from multiple databases of post-translational modifications @Nature_NPJ nature.com/articles/s4154….
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Workshop Invite 🚨 Join Us at the Science Forum South Africa 2024 for a Workshop on AI for Healthcare in Africa — in collaboration with Sisonke Biotik! 📅 Date: 3rd December 2024 ⏰ Time: 2:00 PM – 5:00 PM 📍 Location: CSIR ICC, Pretoria, South Africa The Sisonke Biotik https://t.co/MY32o9GCGe
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Join us for a live demo of the Kids First portal and hear from leading researchers at the Winter Webinar on December 5th, 10:30 AM ET.  Register here: rebrand.ly/82yjs8q #ChampionsofDiscovery
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The 2024 @FAESorg @FAESatNIH_EDU #GlyGen in-person workshop at @NIH was a hit! Postdoc students & research staff learned about glycans, bioinformatics tools, and hands-on training with GRITS Toolbox & GlyGen. Kudos to the presenters! #FAESWorkshop #NIH #glycotime
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Just a few days left to register for the #NuclearArchitecture Meeting hosted by #4DNucleome! Join us in San Diego, CA on December 11-13, 2024. The deadline to register is Monday, December 2nd. Register today! bit.ly/3X9gha0
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The SPARC repository was developed to curate and publish high-quality datasets related to the autonomic nervous system. Now, all peripheral nervous system data can be hosted. Learn more and contribute your data on the SPARC Portal. sparc.science #NIH_SPARC #OpenData
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#NutritionforPrecisionHealth is advancing precision #nutrition and was featured on @CBSSunday! The study is led by a coalition of NIH partners, including #NIHCommonFund, the Office of Nutrition Research, and @AllofUsResearch. Enrollment is open! Watch here allof-us.org/3UY1zkm
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Latest paper from @RothLabUNC @CanCao_Natural High-affinity agonists reveal recognition motifs for the MRGPRD GPCR: Cell Reports cell.com/cell-reports/f…
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Please join us at the AI in health Conference that will be held in Kampala, Uganda on the 28th Nov 2024. The conference is organised by Makerere AI health Lab in collaboration with the Uganda Ministry of Health Uganda and the Uganda Ministry of ICT . The conference will feature
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The 2025 Consortium Undergraduate Student Program (CUSP) is recruiting! Join us for summer internships focused on senescence study in a variety of research sites across the U.S. More info and application at: sennetconsortium.org/internship/
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Want to learn more about your inner cellf? Check out the inner workings of the #thymus & the rest of the @humancellatlas paper package in @Nature, with contributions from our #HubMAP researchers! nature.com/articles/s4158…
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Enjoyed being part of this great meeting this week and look forward to the successes ahead for @DSI_Africa
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Dear Partners and Friends, Below you will find the press release for the 2024 DS-I Africa Consortium Meeting taking place in Mauritius this week. The Data Science for Health Discovery and Innovation in Africa (DS-I-Africa) Consortium is currently hosting over 350 researchers
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Molecular Mechanisms of Metabolic Regulation Used by G Protein-Coupled Receptors mdpi.com/si/223494 #mdpibiomolecules via @Biomol_MDPI
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Join Dr. Marcia Fournier of #NICHD at the #KidsFirst Winter Webinar for the latest funding updates. Register: rebrand.ly/82yjs8q #ChampionsofDiscovery
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Do you develop and market scientific tools? Join us tomorrow, November 22nd from 1-2 PM ET to learn various strategies from #COMPA and @MetaCell during our #CFDEPublicWebinarSeries. Register here: broadinstitute.zoom.us/webinar/regist… @CfdeWorkbench @NIH_CommonFund
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Have you seen the @NaturePortfolio HCA collection yet? Don’t miss the wonderful immersive page at nature.com/immersive/d428… Thank you to all the staff at @Nature and associated journals.
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This week, we presented our genomics, data science and ethics project (PUBGEM-Africa) at the @DSI_Africa meeting in Mauritius. We also had the opportunity to meet and plan with our research-hub partners at @acegid_igh & @mudsreh. Big thanks to Dr Carmen de Kock for presenting the
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Register today for the #Bridge2AI Voice #AI Symposium & #Hackathon 2025! Attendees will get hands-on #demos of new #tech and hear about #ethics in #ArtificialIntelligence. The event will be held in Tampa, FL on 4/22-4/24. Learn more and register: bit.ly/4eHlwD3
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The #UZIMA_DS team is currently attending the 4th DS-I Africa Consortium Meeting in Mauritius, where they are showcasing how we’re leveraging AI & Machine Learning to develop solutions for maternal, newborn & child health, and mental health in Africa. #DSIAfrica2024 #UZIMA_DS2024
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#PRECISEKenya and zim teams were at the DSI Africa Conference this week to showcase their work ! Well done teams 👏@angela_koech @ptmakanga @pvondadelszen #DSIAfrica2024
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Showcasing Africa's unique data resource profile on multimorbidity at @DSI_Africa! Our research enables evidence-based policy & care for Africans living with multiple NCDs #Multimorbidity #NCDs  #DataDriven #madiva #aphrc
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Communications Director at Fogarty International Centre (@Fogarty_NIH) Andrey Kuzmichev gave an informative and engaging session ‘Communicating about your work: Beyond the scientific paper’ which was geared towards empowering DS-I Africa Early Career Researchers with
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#ICYMI Early Career Researchers went on an excursion to the University of Mauritius, Reduit Campus 🇲🇺 for academic and networking exchange. DS-I Africa ECR and University of Mauritius ECR presented their ongoing research. The participants were given a detailed tour of the Centre
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Dr Xin Wu presented the exciting multi-disciplinary work from INFORM Africa that utilizes human mobility data during flooding season to inform medical responses and track SARS-CoV2 transmission. @DSI_Africa #datascience #dsiafrica2024
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Ready to analyze data? Push files to #CAVATICA for seamless analysis! Learn more: rebrand.ly/a59dfe #KidsFirstDRC
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The Gabriella Miller #KidsFirst program is dedicated to advancing structural #BirthDefects & #ChildhoodCancer research. Join our webinar Dec. 5 for a #PediatricResearch showcase from Kids First investigators, and to learn about program's #DataPortal nih.zoomgov.com/webinar/regist…
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The #NIHCommonFund Data Ecosystem (#NIH_CFDE) accelerates biomedical discoveries by improving #data reuse, integration & analysis. Join the COMPA team’s webinar Fri (11/22) at 1PM ET to learn about the MetaCell platform's tools & products. Register here: bit.ly/3vX6iJK
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Open science is changing the future of #neuroscience! Learn how initiatives like SPARC are accelerating research & driving new treatments in this webinar featuring @stappan1 and @BenDichter. See here: bit.ly/4dvt2R0 #openscience #braininitiative #SPARC @AmericanBrainCo
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Dr. Alexander Gelbard of Vanderbilt University Medical Center reflects on the incredible diversity of stakeholders who attended the 2024 Voice AI Symposium. 🔗 Submit abstracts: eventsquid.com/event/26217 #VoiceAI #Biomarkers #HealthcareInnovation #AI #VoiceSymposium2025 #SLP #ENT https://t.co/vrNzh31VUo
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Day 3 of the 4th DS-I Africa Consortium Meeting currently underway in Mauritius kicked off with a plenary session on ‘Innovative Tools and Solutions: Addressing Challenges in DS-I Africa- sharing and repurposing tools and resources’. Prof Bubacarr Bah gave a keynote presentation
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Join our Winter Webinar on Dec 5th at 10:30 AM ET! Hear from Dr. Adam Resnick, Kids First DRC Executive Director, and Kids First Champs on advancing pediatric health through genetic research, collaboration, and precision medicine. rebrand.ly/82yjs8q #ChampionsofDiscovery
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Emma’s case, despite challenges, led to the discovery of a new ultra-rare disorder caused by #CHASERR gene loss, disrupting brain development through excess CHD2 protein. Please click the link below for the full story. 🔗 bit.ly/4fMDGUX
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At the 2024 #CommunityEngagementWorkshop, many voices discussed #NIHCommonFund research & #data practices. Key recommendations for better #Accessibility, #Inclusivity, & #CulturallyRelevant data practices were shared. Read the report of top takeaways: go.nih.gov/q4vFqro
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Dr Judy Gichoya is giving an interactive key note presentation on ‘Shortcuts causing bias in medical imaging’ by asking the audience to relay their own shortcuts they use in their daily lives through computers. When testing for shortcuts you need to overcome technical as well
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Paul Esselaar is joining us virtually to take us through the ‘Data Sharing and Access Guideline’ for the open session & joint discussion on DS-I Africa Data Sharing Guidelines at the 4th DS-I Africa Consortium Meeting currently underway in Mauritius. A key take away from this
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ML research from #DSIAfrica2024! The Nairobi model shows how SHAP values can identify key diabetes risk factors, with body roundness index, triglycerides, and blood pressure emerging as top predictors. Great potential for improving clinical decision-in Africa. #HealthTech
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The first Early Career Researchers Flash Talks went really well, with interesting discussions on colon and breast cancer, diabetes, and Artificial Intelligence from five of our ECR fellows from across Africa! #DSIAfrica2024 #CareerDevelopment #WomenInSTEM #AI
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The Early Career Researchers Poster Session for Day 4 of the 4th DS-I Africa Consortium Meeting was in full swing during the first refreshment break. Teddy Kwaga was one of the participants and his poster was on ‘Assessing Bias in Artificial Intelligence Techniques for Diabetic
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Inspiring early career session at #DSIAfrica! 🌍✨ Highlighting pathways to nurture Africa’s next-gen data science leaders through mentorship, collaboration, and innovation. #DataScience #FutureLeaders
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DS-I Africa Consortium Meeting has started today. Key words so far are collaboration, teamwork, and capacity building. So glad this resonates to what I advocate in building Africa. #DSIAfrica2024 #DataScience #TimeForChange
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The 4th @DSI_Africa consortium meeting officially kicked off today in Mauritius. We will meet all week to discuss the technology, ethics and discoveries from the application of data science for health in Africa. In the opening panel all but 1 of the speakers are female :-)
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The aims of DS-CHANGE based in Ghana include delivering a comprehensive mentored interdisciplinary master’s and PhD degree programs. The group has identified some gaps such as lack of compiled health-related datasets in hospitals they work with. #DSIAfrica2024 #DataScience
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Professor Owolabi is presenting on the GRASP project: Growing Data Science Research in Africa to Stimulate Progress. The primary goal is to harness innovation potential to build sustainable science research capacity in Africa with a focus on brain health. #DSIAfrica2024
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Come join us for a webinar presented by Dr. Joyce Niland and James Cravens on Friday, November 22, 2024, to learn more about the Integrated Islet Distribution Program (IIDP) Research Data Repository! bit.ly/3UStvWI #NIH_SPARC #OpenData @dknet
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We are delighted to announce that registrations for the #ScienceForumSouthAfrica #SFSA2024 are now open! Join us from 4–6 December 2024 for Africa’s premier platform to exchange ideas and explore opportunities in science, innovation, and society. Register sfsa.co.za/registration/ https://t.co/485GgMPY3B
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The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC https://t.co/tgdMOPiAb6
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It's almost time for #ASHG2024! Reminder, we have limited availability for exclusive 1:1 sessions at the #CFDE booth, grab yours before it's too late here: forms.gle/ioovRvfx3NA7SG…. Save travels and see you at Booth 571! @CfdeWorkbench @NIH_CommonFund
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Mark your calendars because we are ONE WEEK away from our #ASHG2024 Ancillary Session on the #CFDE! We look forward to seeing you all in Denver! @CfdeWorkbench @NIH_CommonFund @motrpac
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We are representing the Common Fund Data Ecosystem & debuting our #KnowledgeCenter Resource a #ASHG2024. Come by whenever (sign up below) to learn about how these 14 DCCs & 5 centers within the CFDE can be useful to you as a human geneticist @NIH_CommonFund @CfdeWorkbench
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Join us in two weeks ✌️ at our #ASHG2024 ancillary session: A Human Geneticists' Guide to the Common Fund Data Ecosystem! Hear perspectives by the @NIH_CommonFund, us at the KC, @CfdeWorkbench, @motrpac and @GTExPortal. Hope to see you there!
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Join us this Friday for the #CFDEPublicWebinarSeries featuring #MoTrPAC. Dr. Matthew Wheeler, Jimmy Zhen, & David Jimenez-Morales will present on the Data Hub, general MoTrPAC updates, upcoming data releases, and their pipelines/database structure #CFDE @CfdeWorkbench
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The Common Fund Data Ecosystem is hitting Denver this year, #ASHG2024. Visit our exhibition booth & learn about how the CFDE can support your research @CfdeWorkbench @NIH_CommonFund.
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The NIH Common Fund #Complement_ARIE program needs your help to build a new Data Hub and Coordinating Center for the #NewApproachMethodologies Common Fund program! Explore the Notice of Intent to Publish a #FundingOpportunity at go.nih.gov/K6kfgdb
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📢 Calling all researchers! The #dkNET Pilot #Funding Program invites multi-disciplinary teams to develop #AI foundation models for #Type2Diabetes. LOI Due: Oct 11, 2024 Application Due: Nov 12, 2024 Don’t miss out on this chance! Apply Now: dknet.org/about/ai-pilot
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Learn how @WVCTSI will bring clinical research opportunities to rural communities in West Virginia as one of three new national hubs of the #CAREforHealth network: wvctsi.org/news/story?hea…
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Join #NIH_CFDE on 8/30 at 1PM ET for an introduction webinar for Acute to #ChronicPain Signatures (@a2cps_pain). #A2CPS is an initiative to identify #biomarkers in pain science. Learn more: bit.ly/3vX6iJK
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Learn how our @somaticediting researchers & their colleagues engineered an adeno-associated virus (#AAV) that safely crosses the #BloodBrainBarrier, which can help prevent, treat, and cure brain disorders caused by genetic changes. @NIMHgov  nimh.nih.gov/news/science-n…
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Attending the #HealthITSummit24? Join Dr. Chris Kinsinger, #NIHCommonFund, on 9/19 for a panel discussion on #AI Adoption in the Health Care Ecosystem. #ArtificialIntelligence #Bridge2AI
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Check out this year's winners of the #NIH_SPARC codeathon, who made new #FAIRdata visualization platforms, analysis pipelines, and #AI tools to enhance use of SPARC #neuromodulation data. Learn more about the projects: bit.ly/3AEai3K
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PUBLICATIONS

Social Media

Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse.

Participant 229: female, age 4, with low muscle tone, motor delays, speech and language delays, and autism and a variant in RNU4-2 gene. Reach out if you know of others with similar symptoms and variant! undiagnosed.hms.harvard.edu/participants/p…
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Exciting News! The deadline for the Call for Science for the 2025 Voice AI Symposium has been extended to December 23, 2024! (eventsquid.com/event/26217) Bridge2AI-Voice is part of the @Bridge2AI program funded by the NIH Common Fund.
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The #NIHCommonFund #ComplementARIE program released a new #FundingOpportunity! Explore the announcement and begin preparing your applications now: go.nih.gov/gz5JDK6
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Cell atlasing got the weight of the world on your shoulders? Explore the Atlases Galore & Method of the Year 2024: #SpatialProteomics @naturemethods articles out this week if you need a roadmap to success! Like their namesake, these atlases will hold up well! #CellMapCrew #HuBMAP
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The #NIHCommonFund is hosting a workshop to discuss enabling #PrecisionMedicine with #AI through the integration of #MedicalImaging with other #Data types! Join the virtual interactive discussion 3/11-3/12: go.nih.gov/awiS2id
0
📢 Time is running out! Submit your #AI (#ArtificialIntelligence) abstracts for the upcoming @Bridge2aiVoice Symposium. #Bridge2AI #NIHCommonFund
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8 billion. It's just a number. Today, our 3D tranche browser shows 8 billion* purchasable molecules in biologically relevant, docking-ready 3D formats. cartblanche22.docking.org/tranches/3d * Yes, yes, a wee bit of double counting. But, 8 billion!
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Older adults face growing housing instability, with 168,000 over 65 evicted yearly. A new study by the #NIHCommonFund’s #NIHFIRST program shows that home foreclosures may speed #MemoryDecline. Learn how #HousingInstability impacts health & cognition: go.nih.gov/9fiR3D9
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Are you a #biomedical #researcher interested in human voice #data paired with other clinical information? Learn about this data set from the #NIHCommonFund #Bridge2AI's Voice #AI (@Bridge2aiVoice) project that aims to develop #biomarkers for disease using the human voice data
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Ready to register for #APS2025? Don't forget to stop by the SPARC booth (#1414) in April. We'll be there to answer your questions and share the latest in open science. #NIH_SPARC #OpenScience @APSPhysiology bit.ly/4gZAYwM
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Tune in tomorrow (12/10) at 3 PM ET for the #NIHCommonFund's #Bridge2AI program discussion w/ Dr. Michelle Mello (@StanfordLaw & @StanfordMed) to hear about emerging legal trends in using #AI in #PatientCare. Learn more: bit.ly/3Vh1Y1F
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Today the week long @eLwazi_ODSP /@DSI_Africa Train-the-Trainer workshop commences! Workshop will cover using the eLwazi training workflow, developing competency-based curricula and managing computational training environments Looking forward to the impactful week!
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SPARC Community member Dr. Robert Gereau co-led a project that developed a promising implantable device for reversing opioid overdoses. This is a significant advancement in the effort to combat opioid misuse disorder. #NIH_SPARC #opioidcrisis #OpenScience science.org/doi/10.1126/sc…
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As we wrap up the year, let’s look back at the milestones achieved in pediatric research through the #KidsFirstDRC. From enhanced data resources to new search functionalities, we’ve made strides together. Stay tuned for continued progress in 2025! #PediatricResearch #YearInReview
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📢 Join us for the GlyGen Webinar Series! 🌟 🎙️ Speaker: Dr. John Cipollo, FDA 📅 Date: Dec 10, 2024 🕙 Time: 10 AM EST 🔍 Topic: Mass Spectrometry in Vaccines & Infectious Disease Don't miss this insightful talk! 📖 Details: wiki.glygen.org #glycotime
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Replying to @naturemethods
This month’s Technology Feature by Vivien Marx @metricausa highlights diverse international atlas projects, where they are now, and where they may be going in the future. nature.com/articles/s4159…
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The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳 For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread. nature.com/articles/s4159…
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Witness the latest pediatric research findings at the Kids First Winter Webinar: Champions of Discovery tomorrow, Dec 5th, at 10:30 AM ET. Register now: rebrand.ly/82yjs8q #ChampionsofDiscovery #KidsFirstDRC
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Come join us for a webinar presented by Dr. Changhan He on Friday, December 6, 2024 to learn more about this useful tool exFINDER! tab.so/0bc18539 #OpenData #NIH_SPARC @UCIrvine @dkNET_Info
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If you are attending Science Forum South Africa, please join us on Thursday, 05 Dec, for a sunrise session (07:30 am) on "Enhancing Health Outcomes Through Data Science: Conversations on Science for Society." #SFSA2024 @DSI_Africa @eLwazi_ODSP @UCTHealthSci @MRCza @synthymama,
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Want to learn more about the impact of social #bias on #ArtificialIntelligence (#AI) models used for hospital decision making (#EHR #data)? A new pilot from the #NIHCommonFund #Bridge2AI's @CHoRUS4AI team issues a caution to researchers: go.nih.gov/g8W2en3
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🚀 Call for Science is now open for the 2025 Voice AI Symposium in Tampa! Submit your work by **December 15th** for a chance to present at this premier event. #VoiceAI #PosterCompetition #AIforGood #VoiceBiomarkers #HealthcareInnovation #CallForScience #TechFair #Symposium
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We are thrilled to announce the release of v1 of the Bridge2AI-Voice Dataset, marking a major step forward in using voice as a biomarker of health. 💡 Visit Health Data Nexus to learn more healthdatanexus.ai/content/b2ai-v… #AIHealthcare #VoiceBiomarkers #Bridge2AI #Innovation #ethicalAI
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Our Winter Webinar is this week! Hear from top researchers and learn about the latest Kids First discoveries. Dec 5th, 10:30 AM ET. Join us: rebrand.ly/82yjs8q #KidsFirstDRC #ChampionsofDiscovery
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This Thanksgiving, let's appreciate the sweet side of science! "Grateful for the glycans that make our immune system tick. Without these sugar-coated molecules, we wouldn't have much to be thankful for! #GlycoThanksgiving"
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Don't miss the December 2nd deadline! Submit your abstract for #APS2025 by the end of the day. See you in Baltimore! bit.ly/4gZAYwM #NIH_SPARC #OpenScience @APSPhysiology
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The #NIH_SPARC Data and Resource Center December Office Hours for K-core #curation, MAP-core, SIM-core and DAT-core can be found here: bit.ly/DRCOfficeHours We love questions! We have answers. #computationalmodeling #data https://t.co/AClOJ3IGuQ
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Kids First is part of the NIH Common Fund Data Ecosystem—accelerating research together. Learn more: rebrand.ly/i5pxd4e #CFDE @NIHCommonFund
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Check out this #NIHCommonFund awardee and learn how the Texas Advanced Computing Center (TACC) will create a #CloudComputing workspace to support the #NIH_CFDE's #DataEcosystem. Read more: bit.ly/4i7LDWM
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🚨 GlyGen-CFDE Summer 2025 Internship 🔬 Focus: Bioinformatics & Data Wrangling 📅 Jun 2–Aug 1, 2025 📌 Apply by Jan 20, 2025 on Handshake 🔗 Details: wiki.glygen.org/GlyGen_Interns… #glycotime
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ICYMI: #NutritionforPrecisionHealth was featured on @CBSSunday! See firsthand what it’s like to join this study on how people respond differently to food. The study is led by #NIHCommonFund, Office of #NutritionResearch, @AllofUsResearch & others! allof-us.org/3UY1zkm
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📣 HEALTH CARE PROFESSIONALS: Register for FREE Rare Epilepsies Focused ECHO in 2025 led by National Experts *ATTENTION neurologists, RNs, genetic counselors, PCPs, ER doctors and other HCPs* Learn more and register at: lnkd.in/g32s62vz @UDNForg
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Check out the most recent UDN publication! ⭐️Key takeaway: Next-generation sequencing identified 85% of inherited metabolic diseases in the UDN cohort, uncovering many missed by traditional methods. pubmed.ncbi.nlm.nih.gov/39543639/ @UDNForg
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Have you ever wondered how you can recognize so many different smells? The #NIHCommonFund's #4DNucleome program researchers discovered it may have something to do with the organization of your #DNA during #CellDevelopment! Learn more: go.nih.gov/DMkYlGO
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Are you interested in using #genomic and #phenotypic data for #pediatric research? The #FundingOpportunity from the Gabriella Miller #KidsFirst program co-led by #NIHCommonFund, @theNCI, & @NICHD_NIH opens Jan 16th, 2025: go.nih.gov/oDE9bWv #BirthDefects #ChildhoodCancers
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Join the #NIHCommonFund's #Bridge2AI program for an #ethics discussion about using #AI tools in #PatientCare w/ Dr. Michelle Mello of @StanfordLaw @StanfordMed! Topics include potential malpractice liability risks & algorithmic discrimination. Learn more: bit.ly/3Vh1Y1F
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In a @DruggableGenome funded study, @SchlessingerLab, @gpandeylab, et al. developed KiNet, a user-friendly web portal for exploring kinase-substrate interactions from multiple databases of post-translational modifications @Nature_NPJ nature.com/articles/s4154….
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Workshop Invite 🚨 Join Us at the Science Forum South Africa 2024 for a Workshop on AI for Healthcare in Africa — in collaboration with Sisonke Biotik! 📅 Date: 3rd December 2024 ⏰ Time: 2:00 PM – 5:00 PM 📍 Location: CSIR ICC, Pretoria, South Africa The Sisonke Biotik https://t.co/MY32o9GCGe
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Join us for a live demo of the Kids First portal and hear from leading researchers at the Winter Webinar on December 5th, 10:30 AM ET.  Register here: rebrand.ly/82yjs8q #ChampionsofDiscovery
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The 2024 @FAESorg @FAESatNIH_EDU #GlyGen in-person workshop at @NIH was a hit! Postdoc students & research staff learned about glycans, bioinformatics tools, and hands-on training with GRITS Toolbox & GlyGen. Kudos to the presenters! #FAESWorkshop #NIH #glycotime
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Just a few days left to register for the #NuclearArchitecture Meeting hosted by #4DNucleome! Join us in San Diego, CA on December 11-13, 2024. The deadline to register is Monday, December 2nd. Register today! bit.ly/3X9gha0
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The SPARC repository was developed to curate and publish high-quality datasets related to the autonomic nervous system. Now, all peripheral nervous system data can be hosted. Learn more and contribute your data on the SPARC Portal. sparc.science #NIH_SPARC #OpenData
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#NutritionforPrecisionHealth is advancing precision #nutrition and was featured on @CBSSunday! The study is led by a coalition of NIH partners, including #NIHCommonFund, the Office of Nutrition Research, and @AllofUsResearch. Enrollment is open! Watch here allof-us.org/3UY1zkm
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Latest paper from @RothLabUNC @CanCao_Natural High-affinity agonists reveal recognition motifs for the MRGPRD GPCR: Cell Reports cell.com/cell-reports/f…
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Please join us at the AI in health Conference that will be held in Kampala, Uganda on the 28th Nov 2024. The conference is organised by Makerere AI health Lab in collaboration with the Uganda Ministry of Health Uganda and the Uganda Ministry of ICT . The conference will feature
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The 2025 Consortium Undergraduate Student Program (CUSP) is recruiting! Join us for summer internships focused on senescence study in a variety of research sites across the U.S. More info and application at: sennetconsortium.org/internship/
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Want to learn more about your inner cellf? Check out the inner workings of the #thymus & the rest of the @humancellatlas paper package in @Nature, with contributions from our #HubMAP researchers! nature.com/articles/s4158…
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Enjoyed being part of this great meeting this week and look forward to the successes ahead for @DSI_Africa
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Dear Partners and Friends, Below you will find the press release for the 2024 DS-I Africa Consortium Meeting taking place in Mauritius this week. The Data Science for Health Discovery and Innovation in Africa (DS-I-Africa) Consortium is currently hosting over 350 researchers
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Molecular Mechanisms of Metabolic Regulation Used by G Protein-Coupled Receptors mdpi.com/si/223494 #mdpibiomolecules via @Biomol_MDPI
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Join Dr. Marcia Fournier of #NICHD at the #KidsFirst Winter Webinar for the latest funding updates. Register: rebrand.ly/82yjs8q #ChampionsofDiscovery
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Do you develop and market scientific tools? Join us tomorrow, November 22nd from 1-2 PM ET to learn various strategies from #COMPA and @MetaCell during our #CFDEPublicWebinarSeries. Register here: broadinstitute.zoom.us/webinar/regist… @CfdeWorkbench @NIH_CommonFund
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Have you seen the @NaturePortfolio HCA collection yet? Don’t miss the wonderful immersive page at nature.com/immersive/d428… Thank you to all the staff at @Nature and associated journals.
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This week, we presented our genomics, data science and ethics project (PUBGEM-Africa) at the @DSI_Africa meeting in Mauritius. We also had the opportunity to meet and plan with our research-hub partners at @acegid_igh & @mudsreh. Big thanks to Dr Carmen de Kock for presenting the
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Register today for the #Bridge2AI Voice #AI Symposium & #Hackathon 2025! Attendees will get hands-on #demos of new #tech and hear about #ethics in #ArtificialIntelligence. The event will be held in Tampa, FL on 4/22-4/24. Learn more and register: bit.ly/4eHlwD3
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The #UZIMA_DS team is currently attending the 4th DS-I Africa Consortium Meeting in Mauritius, where they are showcasing how we’re leveraging AI & Machine Learning to develop solutions for maternal, newborn & child health, and mental health in Africa. #DSIAfrica2024 #UZIMA_DS2024
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#PRECISEKenya and zim teams were at the DSI Africa Conference this week to showcase their work ! Well done teams 👏@angela_koech @ptmakanga @pvondadelszen #DSIAfrica2024
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Showcasing Africa's unique data resource profile on multimorbidity at @DSI_Africa! Our research enables evidence-based policy & care for Africans living with multiple NCDs #Multimorbidity #NCDs  #DataDriven #madiva #aphrc
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Communications Director at Fogarty International Centre (@Fogarty_NIH) Andrey Kuzmichev gave an informative and engaging session ‘Communicating about your work: Beyond the scientific paper’ which was geared towards empowering DS-I Africa Early Career Researchers with
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#ICYMI Early Career Researchers went on an excursion to the University of Mauritius, Reduit Campus 🇲🇺 for academic and networking exchange. DS-I Africa ECR and University of Mauritius ECR presented their ongoing research. The participants were given a detailed tour of the Centre
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Dr Xin Wu presented the exciting multi-disciplinary work from INFORM Africa that utilizes human mobility data during flooding season to inform medical responses and track SARS-CoV2 transmission. @DSI_Africa #datascience #dsiafrica2024
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Ready to analyze data? Push files to #CAVATICA for seamless analysis! Learn more: rebrand.ly/a59dfe #KidsFirstDRC
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The Gabriella Miller #KidsFirst program is dedicated to advancing structural #BirthDefects & #ChildhoodCancer research. Join our webinar Dec. 5 for a #PediatricResearch showcase from Kids First investigators, and to learn about program's #DataPortal nih.zoomgov.com/webinar/regist…
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The #NIHCommonFund Data Ecosystem (#NIH_CFDE) accelerates biomedical discoveries by improving #data reuse, integration & analysis. Join the COMPA team’s webinar Fri (11/22) at 1PM ET to learn about the MetaCell platform's tools & products. Register here: bit.ly/3vX6iJK
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Open science is changing the future of #neuroscience! Learn how initiatives like SPARC are accelerating research & driving new treatments in this webinar featuring @stappan1 and @BenDichter. See here: bit.ly/4dvt2R0 #openscience #braininitiative #SPARC @AmericanBrainCo
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Dr. Alexander Gelbard of Vanderbilt University Medical Center reflects on the incredible diversity of stakeholders who attended the 2024 Voice AI Symposium. 🔗 Submit abstracts: eventsquid.com/event/26217 #VoiceAI #Biomarkers #HealthcareInnovation #AI #VoiceSymposium2025 #SLP #ENT https://t.co/vrNzh31VUo
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Day 3 of the 4th DS-I Africa Consortium Meeting currently underway in Mauritius kicked off with a plenary session on ‘Innovative Tools and Solutions: Addressing Challenges in DS-I Africa- sharing and repurposing tools and resources’. Prof Bubacarr Bah gave a keynote presentation
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Join our Winter Webinar on Dec 5th at 10:30 AM ET! Hear from Dr. Adam Resnick, Kids First DRC Executive Director, and Kids First Champs on advancing pediatric health through genetic research, collaboration, and precision medicine. rebrand.ly/82yjs8q #ChampionsofDiscovery
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Emma’s case, despite challenges, led to the discovery of a new ultra-rare disorder caused by #CHASERR gene loss, disrupting brain development through excess CHD2 protein. Please click the link below for the full story. 🔗 bit.ly/4fMDGUX
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At the 2024 #CommunityEngagementWorkshop, many voices discussed #NIHCommonFund research & #data practices. Key recommendations for better #Accessibility, #Inclusivity, & #CulturallyRelevant data practices were shared. Read the report of top takeaways: go.nih.gov/q4vFqro
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Dr Judy Gichoya is giving an interactive key note presentation on ‘Shortcuts causing bias in medical imaging’ by asking the audience to relay their own shortcuts they use in their daily lives through computers. When testing for shortcuts you need to overcome technical as well
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Paul Esselaar is joining us virtually to take us through the ‘Data Sharing and Access Guideline’ for the open session & joint discussion on DS-I Africa Data Sharing Guidelines at the 4th DS-I Africa Consortium Meeting currently underway in Mauritius. A key take away from this
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ML research from #DSIAfrica2024! The Nairobi model shows how SHAP values can identify key diabetes risk factors, with body roundness index, triglycerides, and blood pressure emerging as top predictors. Great potential for improving clinical decision-in Africa. #HealthTech
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The first Early Career Researchers Flash Talks went really well, with interesting discussions on colon and breast cancer, diabetes, and Artificial Intelligence from five of our ECR fellows from across Africa! #DSIAfrica2024 #CareerDevelopment #WomenInSTEM #AI
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The Early Career Researchers Poster Session for Day 4 of the 4th DS-I Africa Consortium Meeting was in full swing during the first refreshment break. Teddy Kwaga was one of the participants and his poster was on ‘Assessing Bias in Artificial Intelligence Techniques for Diabetic
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Inspiring early career session at #DSIAfrica! 🌍✨ Highlighting pathways to nurture Africa’s next-gen data science leaders through mentorship, collaboration, and innovation. #DataScience #FutureLeaders
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DS-I Africa Consortium Meeting has started today. Key words so far are collaboration, teamwork, and capacity building. So glad this resonates to what I advocate in building Africa. #DSIAfrica2024 #DataScience #TimeForChange
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The 4th @DSI_Africa consortium meeting officially kicked off today in Mauritius. We will meet all week to discuss the technology, ethics and discoveries from the application of data science for health in Africa. In the opening panel all but 1 of the speakers are female :-)
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The aims of DS-CHANGE based in Ghana include delivering a comprehensive mentored interdisciplinary master’s and PhD degree programs. The group has identified some gaps such as lack of compiled health-related datasets in hospitals they work with. #DSIAfrica2024 #DataScience
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Professor Owolabi is presenting on the GRASP project: Growing Data Science Research in Africa to Stimulate Progress. The primary goal is to harness innovation potential to build sustainable science research capacity in Africa with a focus on brain health. #DSIAfrica2024
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Come join us for a webinar presented by Dr. Joyce Niland and James Cravens on Friday, November 22, 2024, to learn more about the Integrated Islet Distribution Program (IIDP) Research Data Repository! bit.ly/3UStvWI #NIH_SPARC #OpenData @dknet
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We are delighted to announce that registrations for the #ScienceForumSouthAfrica #SFSA2024 are now open! Join us from 4–6 December 2024 for Africa’s premier platform to exchange ideas and explore opportunities in science, innovation, and society. Register sfsa.co.za/registration/ https://t.co/485GgMPY3B
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The @CfdeWorkbench team will showcase the #CFDE information portal (cfde.info), the #CFDE data portal (data.cfde.cloud), and #GeneSetCart (genesetcart.cfde.cloud) at #ASHG2024 #ASHG24. To learn more about the #CFDE visit booth 571. @NIH_CommonFund @CFDEKC https://t.co/tgdMOPiAb6
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It's almost time for #ASHG2024! Reminder, we have limited availability for exclusive 1:1 sessions at the #CFDE booth, grab yours before it's too late here: forms.gle/ioovRvfx3NA7SG…. Save travels and see you at Booth 571! @CfdeWorkbench @NIH_CommonFund
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Mark your calendars because we are ONE WEEK away from our #ASHG2024 Ancillary Session on the #CFDE! We look forward to seeing you all in Denver! @CfdeWorkbench @NIH_CommonFund @motrpac
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We are representing the Common Fund Data Ecosystem & debuting our #KnowledgeCenter Resource a #ASHG2024. Come by whenever (sign up below) to learn about how these 14 DCCs & 5 centers within the CFDE can be useful to you as a human geneticist @NIH_CommonFund @CfdeWorkbench
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Join us in two weeks ✌️ at our #ASHG2024 ancillary session: A Human Geneticists' Guide to the Common Fund Data Ecosystem! Hear perspectives by the @NIH_CommonFund, us at the KC, @CfdeWorkbench, @motrpac and @GTExPortal. Hope to see you there!
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Join us this Friday for the #CFDEPublicWebinarSeries featuring #MoTrPAC. Dr. Matthew Wheeler, Jimmy Zhen, & David Jimenez-Morales will present on the Data Hub, general MoTrPAC updates, upcoming data releases, and their pipelines/database structure #CFDE @CfdeWorkbench
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The Common Fund Data Ecosystem is hitting Denver this year, #ASHG2024. Visit our exhibition booth & learn about how the CFDE can support your research @CfdeWorkbench @NIH_CommonFund.
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The NIH Common Fund #Complement_ARIE program needs your help to build a new Data Hub and Coordinating Center for the #NewApproachMethodologies Common Fund program! Explore the Notice of Intent to Publish a #FundingOpportunity at go.nih.gov/K6kfgdb
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📢 Calling all researchers! The #dkNET Pilot #Funding Program invites multi-disciplinary teams to develop #AI foundation models for #Type2Diabetes. LOI Due: Oct 11, 2024 Application Due: Nov 12, 2024 Don’t miss out on this chance! Apply Now: dknet.org/about/ai-pilot
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Learn how @WVCTSI will bring clinical research opportunities to rural communities in West Virginia as one of three new national hubs of the #CAREforHealth network: wvctsi.org/news/story?hea…
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Join #NIH_CFDE on 8/30 at 1PM ET for an introduction webinar for Acute to #ChronicPain Signatures (@a2cps_pain). #A2CPS is an initiative to identify #biomarkers in pain science. Learn more: bit.ly/3vX6iJK
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Learn how our @somaticediting researchers & their colleagues engineered an adeno-associated virus (#AAV) that safely crosses the #BloodBrainBarrier, which can help prevent, treat, and cure brain disorders caused by genetic changes. @NIMHgov  nimh.nih.gov/news/science-n…
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Attending the #HealthITSummit24? Join Dr. Chris Kinsinger, #NIHCommonFund, on 9/19 for a panel discussion on #AI Adoption in the Health Care Ecosystem. #ArtificialIntelligence #Bridge2AI
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Check out this year's winners of the #NIH_SPARC codeathon, who made new #FAIRdata visualization platforms, analysis pipelines, and #AI tools to enhance use of SPARC #neuromodulation data. Learn more about the projects: bit.ly/3AEai3K
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@CFDE Workbench 2024
The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.



The CFDE Workbench is actively being developed and maintained by the CFDE Data Resource Center (DRC).The DRC is funded by OT2OD036435 from the Common Fund at the National Institutes of Health.
@CFDE Workbench 2024