Metabolomics
The goal of the Common Fund’s Metabolomics program is to inform basic, translational, and clinical research. Metabolomics is the scientific study of the chemical reactions that occur in organisms, cells, or tissues. Each reaction produces small chemicals called metabolites, which play critical roles in keeping our cells healthy and functioning properly. As these different chemical reactions and the metabolites they produce are unique to every individual, by improving metabolomics methods and making them more accessible to different researchers it may allow for more personalized diagnosis of disease and treatment methods moving forward. (Retrieved from the NIH Common Fund site)
TRAINING & OUTREACH
CFDE Metabolomics Workbench Virtual Summer Workshop 2024
UCSD Metabolomics Workbench ([MW](https://www.metabolomicsworkbench.org/)), as part of the NIH Common Fund Data Ecosystem ([CFDE](https://commonfund.nih.gov/dataecosystem)) is pleased to announce a 4-day virtual Summer Workshop on July 22-25, 2024. Click [here](https://sc-cfdewebdev.sdsc.edu/MW/mwsw24.html) for additional information and registration.
Application ends: July 16, 2024
CFDE Webinar Series
The NIH Common Fund Data Ecosystem (CFDE) is a network of programs conducting innovative, cross-domain research to benefit human health. This CFDE Webinar Series brings the varied programs of the CFDE to the broad biomedical research community. Join us on the last Friday of each month at 1-2 PM ET to learn the science behind the research programs that comprise CFDE, as well as about the CFDE as a whole and its coordination Centers.
Starts: April 26, 2024
Metadata and Processed Data Files
C2M2
1 Current File(s) | 13 Archived File(s)
Modified 4/3/2024
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| MW_C2M2_datapackage_2024-03-10.zip | DRC | 4.0 Mb | 4/3/2024 |
Archived
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| MW_C2M2_2023-12-08_datapackage.zip | DRC | 2.8 Mb | 4/3/2024 | ||
| datapackage.zip | Metabolomics | 2.6 Mb | 9/8/2023 | ||
| datapackage.zip | Metabolomics | 2.4 Mb | 6/7/2023 | ||
| datapackage.zip | Metabolomics | 2.2 Mb | 3/9/2023 | ||
| datapackage.zip | Metabolomics | 2.0 Mb | 12/21/2022 | ||
| datapackage.zip | Metabolomics | 1.9 Mb | 9/9/2022 | ||
| datapackage.zip | Metabolomics | 1.9 Mb | 6/10/2022 | ||
| datapackage.zip | Metabolomics | 1.8 Mb | 4/15/2022 | ||
| datapackage.zip | Metabolomics | 1.3 Mb | 1/12/2022 | ||
| datapackage.zip | Metabolomics | 1.2 Mb | 10/15/2021 | ||
| datapackage.zip | Metabolomics | 1.4 Mb | 8/18/2021 | ||
| datapackage.zip | Metabolomics | 1.1 Mb | 6/10/2021 | ||
| datapackage.zip | Metabolomics | 994.0 Kb | 3/24/2021 |
XMT
1 Current File(s) | 0 Archived File(s)
Modified 12/13/2022
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| Metabolomics_Workbench_Metabolites_2022 | DRC | 25.2 Kb | 12/13/2022 |
Archived
None Available
Attribute Tables
0 Available Files
Current
None Available
Archived
None Available
Knowledge Graph Assertions
2 Current File(s) | 1 Archived File(s)
Modified 5/8/2024
Current
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| MW.zip | DRC | 1.7 Mb | 5/8/2024 | ||
| MW.zip | DRC | 1.7 Mb | 5/8/2024 |
Archived
| Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|---|
| MW.edges.csv | DRC | 12.1 Mb | 10/26/2023 |
Interoperability Assets
ETL Scripts
0 Available Files
Current
None Available
Archived
None Available
API Specifications
2 Current File(s) | 0 Archived File(s)
Modified 6/14/2022
Current
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
Gene ID Conversion REST API (SmartAPI) | DRC | 6/14/2022 | ||
MetGENE REST API (SmartAPI) | DRC | 6/10/2022 |
Archived
None Available
PWB Metanodes
14 Current File(s) | 0 Archived File(s)
Modified 9/15/2023
Current
| Name | Creator | Date Modified | DCC Approved | DRC Approved |
|---|---|---|---|---|
| ConvertedGeneID | DRC | 7/28/2023 | ||
| GeneIDConv | DRC | 7/28/2023 | ||
| MetENP_on_MetSet | DRC | 9/15/2023 | ||
| MetGeneRxnTable | DRC | 5/22/2023 | ||
| MetGeneRxns | DRC | 7/28/2023 | ||
| MetGeneStudies | DRC | 7/31/2023 | ||
| MetGeneStudyTable | DRC | 4/6/2023 | ||
| MetGeneSummary | DRC | 4/6/2023 | ||
| MetGeneSummaryTable | DRC | 5/4/2023 | ||
| MetaboliteInfo | DRC | 9/15/2023 | ||
| MetaboliteSummary | DRC | 9/15/2023 | ||
| MetgeneMetaboliteTable | DRC | 9/15/2023 | ||
| MetgeneMetabolites | DRC | 9/15/2023 | ||
| PPI_StringDB | DRC | 7/31/2023 |
Archived
None Available
Chatbot Specifications
0 Available Files
Current
None Available
Archived
None Available