Genotype Tissue Expression (GTEx)
The Common Fund's Genotype-Tissue Expression (GTEx) Program established a data resource and tissue bank to study the relationship between genetic variants (inherited changes in DNA sequence) and gene expression (how genes are turned on and off) in multiple human tissues and across individuals. GTEx also increased our understanding of how gene expression varies between male and female. (Retrieved from the NIH Common Fund site)
TRAINING & OUTREACH
Biomarker discovery from extracellular (cell-free) RNA-seq and tissue of origin from GTEx RNA-seq profiles
Join us for an engaging hands-on workshop where Meenu Srinivasan of the Louise Laurent Lab at the University of California-San Diego will demonstrate how to perform integrative data analysis utilizing data from two Common Fund Data Ecosystem (CFDE) Data Coordinating Center portals followed by an interactive Q&A session.
Starts: September 12, 2024
Metadata and Processed Data Files
C2M2
1 Current File(s) | 5 Archived File(s)
1 Current File(s)
5 Archived File(s)
Modified 9/1/2023
Current
Filename:
datapackage.zipCreator: GTEx
Filesize: 8.7 Gb
Date Modified: 9/1/2023
DCC Approved:
DRC Approved:
Archived
Filename:
datapackage.zipCreator: GTEx
Filesize: 735.5 Kb
Date Modified: 6/17/2022
DCC Approved:
DRC Approved:
Filename:
datapackage.zipCreator: GTEx
Filesize: 712.7 Kb
Date Modified: 4/7/2022
DCC Approved:
DRC Approved:
Filename:
datapackage.zipCreator: GTEx
Filesize: 375.7 Kb
Date Modified: 1/18/2022
DCC Approved:
DRC Approved:
Filename:
datapackage.zipCreator: GTEx
Filesize: 361.2 Kb
Date Modified: 6/8/2021
DCC Approved:
DRC Approved:
Filename:
datapackage.zipCreator: GTEx
Filesize: 37.4 Kb
Date Modified: 3/17/2021
DCC Approved:
DRC Approved:
XMT
2 Current File(s) | 2 Archived File(s)
2 Current File(s)
2 Archived File(s)
Modified 3/10/2023
Current
Filename:
GTEx_Tissues_V8_2023.gmtCreator: DRC
Filesize: 320.4 Kb
Date Modified: 3/10/2023
DCC Approved:
DRC Approved:
Filename:
GTEx_Aging_Signatures_2021.gmtCreator: DRC
Filesize: 482.4 Kb
Date Modified: 6/6/2022
DCC Approved:
DRC Approved:
Archived
Filename:
GTEx_Tissue_Expression_Down.gmtCreator: DRC
Filesize: 26.9 Mb
Date Modified: 9/9/2019
DCC Approved:
DRC Approved:
Filename:
GTEx_Tissue_Expression_Up.gmtCreator: DRC
Filesize: 27.1 Mb
Date Modified: 9/9/2019
DCC Approved:
DRC Approved:
Attribute Tables
0 Available Files
Current
None Available
Archived
None Available
Knowledge Graph Assertions
1 Current File(s) | 1 Archived File(s)
1 Current File(s)
1 Archived File(s)
Modified 5/8/2024
Current
Archived
Filename:
GTEX.edges.csvCreator: DRC
Filesize: 4.1 Gb
Date Modified: 10/26/2023
DCC Approved:
DRC Approved:
Interoperability Assets
ETL Scripts
0 Available Files
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None Available
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API Specifications
2 Current File(s) | 0 Archived File(s)
2 Current File(s)
0 Archived File(s)
Modified 10/1/2023
Current
Archived
None Available
PWB Metanodes
0 Available Files
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None Available
Archived
None Available
Chatbot Specifications
0 Available Files
Current
None Available
Archived
None Available
Apps URLs
0 Available Files
Current
None Available
Archived
None Available