ptm_subtype.tsv

Sourced from the CFDE-CC Documentation Wiki

The ptm_subtype.tsv table will have as many rows as the number of unique ptm_subtype terms appearing in the ptm_subtype column of ptm.tsv. This table can be empty (header-row only).

FieldField DescriptionRequired?Field Value TypeExtra Info
idA valid ptm_subtype ID from Gene OntologyRequiredstringExample: GO:0006493
nameA short, human-readable, machine-readable label for this Gene Ontology termRequiredstringprotein O-linked glycosylation
descriptionA human-readable description of this Gene Ontology termOptionalstringPlease note that ptm_type and ptm_subtype are related in a hierarchy. For example, if ptm_type is GO:0006486, then ptm_subtype will be one of the subentries of GO:0006486 but not the regulation terms, e.g., GO:0006493. Similarly, if ptm_type is GO:0006468, then ptm_subtype will be one of its subentries, such as GO:0007258.
synonymsA list of synonyms for this term as identified by the Gene Ontology metadataOptionalJSON array of stringsExample: ["text1", "text2"]. Provide an empty JSON array [] if a value is null.

Return to C2M2 Documentation

This repository is under review for potential modification in compliance with Administration directives.