compound.tsv

Sourced from the CFDE-CC Documentation Wiki

This table must not be manually created. Users should skip this, and all other tables marked "Built by script" in this summary, preparing only the rest of their datapackage's TSV files (those marked "Prepared by submitter") for submission. Once the "Prepared by submitter" tables are ready, users should then use the C2M2 submission prep script to automatically generate this table (and the other "Built by script" tables) using the information in the "Prepared by submitter" tables.

The compound.tsv table will have at most as many rows as the number of unique PubChem terms appearing in the substance.tsv table (fewer rows, if multiple substances map to the same compound).

FieldField DescriptionRequired?Field Value TypeExtra Info
idA GlyTouCan ID or a PubChem compound ID (CID)RequiredstringExample: 271
nameA short, human-readable, machine-read-friendly label for this PubChem CIDRequiredstring
descriptionA human-readable description of this PubChem CIDOptionalstring
synonymsA list of synonyms for this PubChem CIDOptionalJSON array of stringsprovide empty JSON array [] if value is null

Return to C2M2 Documentation