Library of Integrated Network-based Cellular Signatures (LINCS)
The Common Fund’s Library of Integrated Network-based Cellular Signatures (LINCS) program developed a library that catalogs changes that occur when different types of cells are exposed to a variety of agents that disrupt normal cellular functions, called “perturbagens.” This library integrated data across cell types, perturbagens, and measurements of cellular responses for use by scientists to design and conduct experiments that can help us better understand normal and diseased cellular states and how to alter them. (Retrieved from the NIH Common Fund site)
TRAINING & OUTREACH
LINCS Summer Traniees Virtual Symposium 2024
A virtual symposium hosted by the Ma’ayan Lab and the Mount Sinai Center for Bioinformatics will feature the accomplishments made by 10 summer trainees during a 10-week research-intensive full-time training program. The projects cover topics such as data integration, data visualization, LLM integration, and Knowledge Graphs in the field of biomedical data science and bioinformatics, leveraging the power of AI and other computational tools and methods.
Starts: August 8, 2024
Playbook Workflow Builder Virtual Workshop 2024
The Playbook Workflow Builder (PWB) is a web-based platform that facilitates the interactive construction of workflows by enabling users. The workflows can be constructed from contributed building blocks without technical expertise. The workshop will demonstrate how to use the platform via interactive sessions, as well as, introduce ways the community can contribute to the project.
Starts: June 25, 2024
Metadata and Processed Data Files
C2M2
1 Current File(s) | 10 Archived File(s)
1 Current File(s)
10 Archived File(s)
Modified 9/18/2023
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datapackage.zipCreator: LINCS
Filesize: 169.2 Mb
Date Modified: 9/18/2023
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datapackage.zipCreator: LINCS
Filesize: 166.0 Mb
Date Modified: 6/15/2023
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datapackage.zipCreator: LINCS
Filesize: 166.7 Mb
Date Modified: 3/21/2023
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datapackage.zipCreator: LINCS
Filesize: 166.2 Mb
Date Modified: 12/2/2022
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datapackage.zipCreator: LINCS
Filesize: 165.5 Mb
Date Modified: 9/14/2022
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datapackage.zipCreator: LINCS
Filesize: 164.2 Mb
Date Modified: 6/20/2022
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datapackage.zipCreator: LINCS
Filesize: 171.1 Mb
Date Modified: 4/14/2022
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datapackage.zipCreator: LINCS
Filesize: 171.1 Mb
Date Modified: 1/11/2022
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datapackage.zipCreator: LINCS
Filesize: 131.1 Mb
Date Modified: 9/29/2021
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datapackage.zipCreator: LINCS
Filesize: 141.3 Mb
Date Modified: 6/2/2021
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datapackage.zipCreator: LINCS
Filesize: 28.1 Mb
Date Modified: 3/24/2021
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XMT
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Modified 12/13/2022
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Creator: LINCS
Filesize: 14.9 Mb
Date Modified: 12/13/2022
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Filesize: 15.6 Mb
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Filesize: 87.4 Kb
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LINCS_L1000_Chem_Pert_up.gmtCreator: LINCS
Filesize: 15.5 Mb
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Filesize: 93.0 Kb
Date Modified: 6/6/2022
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LINCS_L1000_Chem_Pert_down.gmtCreator: LINCS
Filesize: 13.4 Mb
Date Modified: 6/6/2022
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Attribute Tables
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Modified 3/29/2024
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Filesize: 317.5 Mb
Date Modified: 3/29/2024
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Filesize: 1.4 Gb
Date Modified: 3/28/2024
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LINCS L1000 Chemical PerturbationsCreator: LINCS
Filesize: 33.6 Gb
Date Modified: 6/23/2021
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LINCS L1000 CRISPR PerturbationsCreator: LINCS
Filesize: 6.5 Gb
Date Modified: 6/23/2021
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Knowledge Graph Assertions
1 Current File(s) | 1 Archived File(s)
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Modified 5/8/2024
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LINCS.edges.csvCreator: LINCS
Filesize: 54.6 Mb
Date Modified: 10/26/2023
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Interoperability Assets
ETL Scripts
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Modified 5/22/2022
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API Specifications
7 Current File(s) | 1 Archived File(s)
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Modified 1/31/2023
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SigCom LINCS Metadata (SmartAPI)
Creator: LINCS
Date Modified: 5/22/2022
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Entity Pages
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Modified 3/8/2024
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PWB Metanodes
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Modified 2/26/2024
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Creator: LINCS
Date Modified: 2/7/2024
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Date Modified: 2/7/2024
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Chatbot Specifications
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Apps URLs
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Modified 6/11/2024
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