Library of Integrated Network-based Cellular Signatures (LINCS)
The Common Fund’s Library of Integrated Network-based Cellular Signatures (LINCS) program developed a library that catalogs changes that occur when different types of cells are exposed to a variety of agents that disrupt normal cellular functions, called “perturbagens.” This library integrated data across cell types, perturbagens, and measurements of cellular responses for use by scientists to design and conduct experiments that can help us better understand normal and diseased cellular states and how to alter them. (Retrieved from the NIH Common Fund site)
TRAINING & OUTREACH
Summer Research Program in Biomedical Big Data Science
The LINCS DCC Summer Research Training Program in Biomedical Big Data Science is a research intensive ten-week training program for undergraduates interested in bioinformatics. Summer fellows training in the Ma’ayan Lab at the Icahn School of Medicine at Mount Sinai conduct faculty-mentored research in the areas: data harmonization, machine learning, cloud computing, and dynamic data visualization.
Application deadline: February 1, 2025
LINCS Summer Trainees Virtual Symposium 2024
This virtual symposium hosted by the Ma’ayan Lab and the Mount Sinai Center for Bioinformatics featured the accomplishments of 10 summer trainees during a 10-week research-intensive full-time training program. The projects covered topics such as data integration, data visualization, LLM integration, and knowledge graphs in the field of biomedical data science and bioinformatics, leveraging the power of AI and other computational tools and methods.
Starts: August 8, 2024
Metadata and Processed Data Files
C2M2
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Modified 9/18/2023
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datapackage.zipCreator: LINCS
Filesize: 169.2 Mb
Date Modified: 9/18/2023
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datapackage.zipCreator: LINCS
Filesize: 166.0 Mb
Date Modified: 6/15/2023
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datapackage.zipCreator: LINCS
Filesize: 166.7 Mb
Date Modified: 3/21/2023
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datapackage.zipCreator: LINCS
Filesize: 166.2 Mb
Date Modified: 12/2/2022
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datapackage.zipCreator: LINCS
Filesize: 165.5 Mb
Date Modified: 9/14/2022
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datapackage.zipCreator: LINCS
Filesize: 164.2 Mb
Date Modified: 6/20/2022
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datapackage.zipCreator: LINCS
Filesize: 171.1 Mb
Date Modified: 4/14/2022
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datapackage.zipCreator: LINCS
Filesize: 171.1 Mb
Date Modified: 1/11/2022
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datapackage.zipCreator: LINCS
Filesize: 131.1 Mb
Date Modified: 9/29/2021
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datapackage.zipCreator: LINCS
Filesize: 141.3 Mb
Date Modified: 6/2/2021
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datapackage.zipCreator: LINCS
Filesize: 28.1 Mb
Date Modified: 3/24/2021
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XMT
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Modified 9/14/2024
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Creator: LINCS
Filesize: 19.9 Mb
Date Modified: 9/14/2024
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Filesize: 14.9 Mb
Date Modified: 12/13/2022
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LINCS_L1000_Chem_Pert_down.gmtCreator: LINCS
Filesize: 13.4 Mb
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LINCS_L1000_Chem_Pert_up.gmtCreator: LINCS
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Filesize: 93.0 Kb
Date Modified: 6/6/2022
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Filesize: 87.4 Kb
Date Modified: 6/6/2022
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Attribute Tables
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Modified 3/29/2024
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Filesize: 1.4 Gb
Date Modified: 3/28/2024
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LINCS L1000 CRISPR PerturbationsCreator: LINCS
Filesize: 6.5 Gb
Date Modified: 6/23/2021
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LINCS L1000 Chemical PerturbationsCreator: LINCS
Filesize: 33.6 Gb
Date Modified: 6/23/2021
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Knowledge Graph Assertions
1 Current File(s) | 1 Archived File(s)
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Modified 5/8/2024
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LINCS.edges.csvCreator: LINCS
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Date Modified: 10/26/2023
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Interoperability Assets
ETL Scripts
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API Specifications
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SigCom LINCS Metadata (SmartAPI)
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Date Modified: 5/22/2022
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Entity Pages
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PWB Metanodes
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Creator: LINCS
Date Modified: 2/7/2024
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Date Modified: 2/7/2024
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Chatbot Specifications
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Apps URLs
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