The Extracellular RNA Communication program is exploring the biology of extracellular RNA (exRNA). Once thought to exist only within cells, in a paradigm shift for science, RNA is now known to be exported from cells as “extracellular RNA” and to play a role in cell-to-cell communication. Since its founding, the program has established data standards, a data portal, and tools and reagents available to the scientific community. The program cataloged exRNA molecules found in human biofluids like plasma, saliva, and urine from over 2000 donors. It also identified potential exRNA biomarkers for nearly 30 diseases, including cardiovascular disease, pregnancy complications, glaucoma, diabetes, and multiple types of cancer. (Retrieved from the NIH Common Fund site)
CFDE Webinar Series
The CFDE Webinar Series will feature the exRNA DCC. The seminar will be about ‘Tools and methods for discovering disease-causing gene regulatory variants from WGS data with application to Congenital Heart Disease’ presented by Keyang Yu, a Genboree Research Assistant.
Biomarker discovery from extracellular (cell-free) RNA-seq and tissue of origin from GTEx RNA-seq profiles
Join us for an engaging hands-on workshop where Meenu Srinivasan of the Louise Laurent Lab at the University of California-San Diego will demonstrate how to perform integrative data analysis utilizing data from two Common Fund Data Ecosystem (CFDE) Data Coordinating Center portals followed by an interactive Q&A session.
C2M2
1 Current File(s) | 7 Archived File(s)
1 Current File(s)
7 Archived File(s)
Modified 12/18/2024
Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
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CFDE_20241216_2.zip | ExRNA | 12.0 Mb | 12/18/2024 |
Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
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datapackage.zip | ExRNA | 11.1 Mb | 8/17/2023 | ||
datapackage.zip | ExRNA | 10.7 Mb | 3/23/2023 | ||
datapackage.zip | ExRNA | 53.3 Mb | 4/16/2022 | ||
datapackage.zip | ExRNA | 7.0 Mb | 1/21/2022 | ||
datapackage.zip | ExRNA | 5.6 Mb | 8/19/2021 | ||
datapackage.zip | ExRNA | 5.4 Mb | 6/11/2021 | ||
datapackage.zip | ExRNA | 5.4 Mb | 3/18/2021 |
XMT
1 Current File(s) | 1 Archived File(s)
1 Current File(s)
1 Archived File(s)
Modified 9/25/2024
Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
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RBP_unique_loci_in_biofluids.rbpmt | ExRNA | 399.1 Kb | 9/25/2024 |
Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
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RBP_unique_loci_in_biofluids.rbpmt | ExRNA | 398.7 Kb | 9/24/2024 |
Attribute Tables
0 Available Files
None Available
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Knowledge Graph Assertions
1 Current File(s) | 1 Archived File(s)
1 Current File(s)
1 Archived File(s)
Modified 5/8/2024
Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
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ERCC.zip | ExRNA | 461.4 Mb | 5/8/2024 |
Filename | Creator | Filesize | Date Modified | DCC Approved | DRC Approved |
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ERCC.edges.csv | DRC | 4.6 Gb | 10/26/2023 |
ETL Scripts
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API Specifications
4 Current File(s) | 0 Archived File(s)
4 Current File(s)
0 Archived File(s)
Modified 8/30/2022
Name | Creator | Date Modified | DCC Approved | DRC Approved |
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Allele Registry | DRC | 8/29/2019 | ||
CFDE GeneReg Linked Data Hub | DRC | 8/30/2022 | ||
Linked Data Hub | DRC | 9/5/2019 | ||
exRNA Atlas JSON-LD (OpenAPI) | DRC | 2/20/2019 |
None Available
PWB Metanodes
8 Current File(s) | 0 Archived File(s)
8 Current File(s)
0 Archived File(s)
Modified 10/19/2023
Name | Creator | Date Modified | DCC Approved | DRC Approved |
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GeneInfo | DRC | 10/19/2023 | ||
Regulatory Element | DRC | 10/19/2023 | ||
Regulatory Element Info | DRC | 10/19/2023 | ||
Regulatory Element Info | DRC | 10/19/2023 | ||
Variant | DRC | 10/19/2023 | ||
Variant | DRC | 10/19/2023 | ||
VariantInfo | DRC | 10/19/2023 | ||
VariantInfo | DRC | 10/19/2023 |
None Available
Chatbot Specifications
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Apps URLs
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None Available